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Details for NP_442934.1_8

Name NP_442934.1_8
Length 20
Regular expression TTT[GC][AT][AC]GA[AG][TA][TG][AT]AA[GA]G[CA]AA[CA]
Central No

Motif logo

Genes containing this motif

33 unique genes found. Note that a gene can occur multiple times in the table below since a motif can be assigned to more than one position in its promoter.

Table filtering
ORF Direction Start Stop Score q-value
slr1491 Reverse -20 -39 7.86593 0.266
slr1774 Forward -367 -348 8.25926 0.266
slr1306 Reverse -330 -349 11.4058 0.23
slr1077 Forward -58 -39 12.0942 0.219
ssl1923 Reverse -38 -57 7.57094 0.266
sll1931 Reverse -226 -245 12.3892 0.219
slr1906 Reverse -241 -260 7.37428 0.266
sll0984 Reverse -279 -298 8.84924 0.266
sll1717 Reverse -83 -102 7.57094 0.266
sll1274 Forward -159 -140 15.6341 0.173
sll1949 Reverse -123 -142 9.53756 0.266
slr2067 Forward -224 -205 9.53756 0.266
sll1182 Reverse -73 -92 16.0274 0.173
sll0273 Forward -134 -115 7.27595 0.266
sll0355 Forward -173 -154 15.5357 0.173
slr1927 Reverse -23 -42 7.86593 0.266
sll1861 Reverse -78 -97 7.57094 0.266
ssl0294 Forward -376 -357 8.55425 0.266
slr0351 Reverse -164 -183 7.57094 0.266
sll0210 Forward -337 -318 7.7676 0.266
slr0913 Reverse -247 -266 16.9124 0.173
sll0586 Forward -175 -156 14.6508 0.173
slr0623 Reverse -189 -208 14.6508 0.173
slr0787 Reverse -59 -78 7.47261 0.266
sll0678 Reverse -52 -71 7.57094 0.266
smr0002 Reverse -91 -110 7.57094 0.266
slr0704 Reverse -252 -271 7.57094 0.266
sll0667 Reverse -74 -93 8.84924 0.266
sll0499 Reverse -67 -86 12.6841 0.219
slr0544 Forward -361 -342 12.6841 0.219
slr0551 Reverse -167 -186 7.47261 0.266
ssl7039 Reverse -331 -350 7.27595 0.266
slr7041 Forward -29 -10 7.27595 0.266
ORF Direction Start Stop Score q-value

TOMTOM

TOMTOM is an application for comparing motifs to known motifs in existing databases. Here's the possibility of running TOMTOM on this motif against the Prodoric or RegTransBase database. It can take up to 1 minute before the results show up, depending on server load. If you want to run TOMTOM against other databases, or with more custom settings, please visit the TOMTOM website.

Options

PSPM

0.000  0.000  0.000  1.000  
0.000 0.000 0.125 0.875
0.000 0.000 0.000 1.000
0.000 0.375 0.625 0.000
0.625 0.000 0.000 0.375
0.500 0.375 0.125 0.000
0.000 0.125 0.875 0.000
0.875 0.000 0.125 0.000
0.625 0.000 0.375 0.000
0.375 0.000 0.000 0.625
0.000 0.000 0.375 0.625
0.625 0.000 0.000 0.375
1.000 0.000 0.000 0.000
1.000 0.000 0.000 0.000
0.375 0.000 0.625 0.000
0.000 0.000 1.000 0.000
0.250 0.625 0.000 0.125
1.000 0.000 0.000 0.000
1.000 0.000 0.000 0.000
0.375 0.500 0.125 0.000