Your browser is old and dusty. Try Google Chrome!

Details for NP_442933.1_6

Name NP_442933.1_6
Length 20
Regular expression A[GT][CT]TT[TC]AA[AT][AT]AT[TC][TG][AT]TT[TG][AG][AT]
Central Yes

Motif logo

Genes containing this motif

129 unique genes found. Note that a gene can occur multiple times in the table below since a motif can be assigned to more than one position in its promoter.

Table filtering
ORF Direction Start Stop Score q-value
sll1401 Reverse -89 -108 16.8539 0.171
sll1062 Reverse -1 -20 16.09 0.213
slr0727 Reverse -102 -121 15.2305 0.243
slr0728 Forward -342 -323 14.4666 0.284
slr0731 Forward -53 -34 13.5117 0.287
ssl1326 Reverse -116 -135 12.3658 0.288
slr0734 Forward -181 -162 12.3658 0.288
slr0241 Forward -363 -344 14.4666 0.284
slr0242 Forward -21 -2 17.9998 0.123
sll1037 Reverse -143 -162 16.4719 0.184
slr1776 Forward -61 -42 13.9891 0.284
slr0984 Forward -368 -349 12.6523 0.287
slr1613 Forward -166 -147 12.0793 0.296
slr1071 Reverse -255 -274 13.8937 0.287
slr1076 Forward -48 -29 17.5223 0.133
ssr1155 Forward -27 -8 13.6072 0.287
slr0689 Forward -244 -225 13.6072 0.287
slr1594 Reverse -330 -349 12.5568 0.287
sll1510 Forward -124 -105 14.5621 0.284
slr1755 Forward -334 -315 12.5568 0.287
slr1761 Reverse -36 -55 13.8937 0.287
slr1847 Forward -39 -20 14.5621 0.284
sll1750 Forward -167 -148 12.4613 0.288
slr2036 Forward -52 -33 12.6523 0.287
slr2036 Forward -288 -269 12.1748 0.288
slr1908 Reverse -355 -374 12.7478 0.287
sll1291 Forward -156 -137 13.7027 0.287
sll1578 Reverse -219 -238 14.7531 0.284
slr2017 Reverse -20 -39 13.0342 0.287
slr1135 Forward -59 -40 12.2703 0.288
sll1082 Forward -42 -23 12.5568 0.287
sll1080 Reverse -39 -58 12.4613 0.288
sll1730 Forward -34 -15 12.1748 0.288
sll1454 Reverse -105 -124 12.1748 0.288
sll1130 Forward -315 -296 16.6629 0.171
ssl2245 Forward -52 -33 16.6629 0.171
ssr2067 Reverse -151 -170 13.5117 0.287
slr1888 Reverse -250 -269 15.4215 0.237
sll1621 Forward -119 -100 13.1297 0.287
slr1738 Reverse -192 -211 13.1297 0.287
slr0870 Forward -211 -192 12.8432 0.287
sll1954 Forward -229 -210 18.6683 0.107
slr2062 Reverse -200 -219 18.6683 0.107
sll1595 Forward -64 -45 12.2703 0.288
slr1726 Reverse -359 -378 12.2703 0.288
slr0260 Forward -137 -118 12.5568 0.287
slr0262 Forward -30 -11 12.1748 0.288
sll0245 Reverse -113 -132 13.0342 0.287
slr2081 Reverse -14 -33 12.2703 0.288
sll1239 Reverse -339 -358 15.517 0.237
sll1239 Reverse -307 -326 14.1801 0.284
slr1322 Forward -107 -88 15.517 0.237
slr1322 Forward -139 -120 14.1801 0.284
sll1233 Reverse -47 -66 12.5568 0.287
slr1340 Forward -329 -310 13.7982 0.287
slr1958 Reverse -55 -74 15.6125 0.237
sll1890 Reverse -77 -96 19.3367 0.107
slr1969 Forward -115 -96 19.3367 0.107
slr1974 Forward -367 -348 12.4613 0.288
sll1381 Forward -248 -229 14.2756 0.284
slr1278 Reverse -188 -207 12.7478 0.287
sll1433 Reverse -350 -369 17.0449 0.162
sll1091 Reverse -175 -194 13.9891 0.284
slr1167 Forward -207 -188 13.9891 0.284
sll1086 Reverse -112 -131 13.7982 0.287
slr1173 Forward -110 -91 13.7982 0.287
sll1560 Forward -52 -33 12.6523 0.287
slr1683 Reverse -134 -153 12.6523 0.287
slr0947 Forward -47 -28 13.3207 0.287
slr1623 Forward -118 -99 16.7584 0.171
slr1649 Forward -45 -26 16.1855 0.209
sll0265 Reverse -116 -135 15.6125 0.237
sll0146 Forward -164 -145 14.5621 0.284
slr0322 Reverse -74 -93 18.1908 0.123
slr0322 Forward -125 -106 13.0342 0.287
sll0016 Forward -268 -249 18.9547 0.107
slr0006 Reverse -131 -150 18.9547 0.107
sll0194 Forward -227 -208 12.2703 0.288
slr0229 Reverse -166 -185 12.2703 0.288
sll0689 Forward -185 -166 13.0342 0.287
sll0689 Reverse -160 -179 12.5568 0.287
sll0617 Forward -212 -193 12.5568 0.287
slr0630 Reverse -337 -356 12.5568 0.287
sll0601 Reverse -361 -380 21.151 0.0646
slr0649 Forward -24 -5 21.151 0.0646
sll0379 Reverse -153 -172 13.1297 0.287
sll0182 Forward -342 -323 12.9387 0.287
ssl0331 Forward -67 -48 18.7637 0.107
slr0212 Reverse -143 -162 18.7637 0.107
sll0832 Reverse -112 -131 14.0846 0.284
ssr1407 Forward -198 -179 14.0846 0.284
sll0102 Reverse -141 -160 17.9043 0.123
sll0102 Forward -82 -63 15.4215 0.237
slr0105 Forward -205 -186 17.9043 0.123
slr0105 Reverse -264 -283 15.4215 0.237
slr0111 Reverse -14 -33 12.7478 0.287
slr0111 Forward -33 -14 12.2703 0.288
slr0120 Forward -64 -45 17.7133 0.131
slr0303 Forward -22 -3 14.5621 0.284
slr0699 Forward -183 -164 12.9387 0.287
slr0708 Reverse -139 -158 12.0793 0.296
slr0022 Reverse -22 -41 15.0396 0.262
sll0027 Reverse -125 -144 12.9387 0.287
sll1330 Forward -113 -94 14.3711 0.284
sll1365 Forward -41 -22 17.4269 0.133
slr1462 Reverse -188 -207 17.4269 0.133
slr0667 Reverse -104 -123 12.8432 0.287
sll1477 Forward -245 -226 14.3711 0.284
sll0723 Reverse -379 -398 15.326 0.237
sll0451 Forward -136 -117 14.7531 0.284
slr0449 Forward -38 -19 12.2703 0.288
sll0449 Reverse -345 -364 12.1748 0.288
sll0447 Reverse -283 -302 13.5117 0.287
ssl5007 Forward -90 -71 13.4162 0.287
slr5012 Forward -90 -71 18.3818 0.12
sll5032 Forward -30 -11 13.0342 0.287
slr5078 Reverse -322 -341 14.5621 0.284
sll5086 Forward -147 -128 15.326 0.237
slr5088 Forward -30 -11 15.708 0.237
ssl5091 Forward -90 -71 13.4162 0.287
ssr5092 Reverse -282 -301 13.4162 0.287
ssr5120 Reverse -303 -322 12.9387 0.287
slr7011 Reverse -18 -37 12.4613 0.288
slr7060 Reverse -8 -27 13.1297 0.287
sll7089 Forward -59 -40 12.6523 0.287
ssr6002 Forward -90 -71 13.4162 0.287
slr6014 Reverse -33 -52 12.7478 0.287
sll6017 Forward -246 -227 12.9387 0.287
ssr6019 Reverse -263 -282 12.9387 0.287
ssl6061 Reverse -226 -245 13.4162 0.287
ssr6062 Forward -90 -71 13.4162 0.287
slr6073 Reverse -33 -52 12.7478 0.287
sll6076 Forward -246 -227 12.9387 0.287
ssr6078 Reverse -263 -282 12.9387 0.287
sll6098 Reverse -100 -119 14.0846 0.284
ssr6099 Forward -82 -63 14.0846 0.284
slr6100 Forward -377 -358 14.0846 0.284
ORF Direction Start Stop Score q-value

TOMTOM

TOMTOM is an application for comparing motifs to known motifs in existing databases. Here's the possibility of running TOMTOM on this motif against the Prodoric or RegTransBase database. It can take up to 1 minute before the results show up, depending on server load. If you want to run TOMTOM against other databases, or with more custom settings, please visit the TOMTOM website.

Options

PSPM

1.000  0.000  0.000  0.000  
0.188 0.188 0.312 0.312
0.062 0.625 0.000 0.312
0.062 0.062 0.000 0.875
0.000 0.188 0.000 0.812
0.000 0.250 0.000 0.750
0.875 0.000 0.000 0.125
0.812 0.125 0.000 0.062
0.688 0.000 0.062 0.250
0.438 0.125 0.125 0.312
0.875 0.125 0.000 0.000
0.125 0.000 0.000 0.875
0.188 0.250 0.000 0.562
0.188 0.125 0.312 0.375
0.562 0.000 0.000 0.438
0.000 0.125 0.000 0.875
0.188 0.000 0.000 0.812
0.062 0.000 0.438 0.500
0.500 0.062 0.438 0.000
0.625 0.062 0.000 0.312