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Details for NP_442933.1_3

Name NP_442933.1_3
Length 20
Regular expression [AC]A[TAG]TTTT[ATG][AG][CA]T[GC][AT][AT][TA]T[TC][TC]A[AG]
Central No

Motif logo

Genes containing this motif

61 unique genes found. Note that a gene can occur multiple times in the table below since a motif can be assigned to more than one position in its promoter.

Table filtering
ORF Direction Start Stop Score q-value
slr1491 Forward -61 -42 16.281 0.261
slr1062 Reverse -119 -138 14.3711 0.28
sll1511 Forward -277 -258 14.4666 0.28
ssr2711 Forward -65 -46 14.1801 0.28
sll1004 Forward -245 -226 14.6576 0.276
slr1908 Forward -74 -55 19.1457 0.214
slr2073 Reverse -308 -327 15.899 0.261
slr2074 Forward -43 -24 14.2756 0.28
sll1745 Forward -238 -219 17.2359 0.225
slr1535 Forward -373 -354 16.1855 0.261
sll1634 Reverse -40 -59 14.5621 0.278
slr1748 Forward -176 -157 14.5621 0.278
slr0888 Forward -52 -33 18.7637 0.221
sll1306 Forward -52 -33 14.7531 0.269
slr1854 Reverse -54 -73 15.899 0.261
sll1626 Forward -96 -77 17.7133 0.225
slr2001 Reverse -242 -261 14.2756 0.28
slr2123 Forward -353 -334 14.7531 0.269
sll1239 Reverse -69 -88 14.7531 0.269
slr1322 Forward -377 -358 14.7531 0.269
slr1327 Reverse -61 -80 19.2412 0.214
sll0818 Reverse -236 -255 14.2756 0.28
ssl1520 Reverse -9 -28 14.2756 0.28
sll1247 Reverse -191 -210 17.0449 0.225
slr1351 Forward -62 -43 17.0449 0.225
sll1899 Reverse -39 -58 15.6125 0.267
slr1152 Reverse -104 -123 16.281 0.261
sll1537 Forward -334 -315 15.326 0.267
slr1627 Reverse -144 -163 15.326 0.267
sll1536 Reverse -292 -311 15.9945 0.261
slr1629 Forward -249 -230 15.9945 0.261
sll0427 Reverse -27 -46 16.9494 0.225
slr0443 Forward -200 -181 16.9494 0.225
sll0262 Forward -27 -8 15.135 0.269
slr1944 Reverse -210 -229 14.8486 0.269
sll0761 Forward -381 -362 14.8486 0.269
sll0191 Reverse -64 -83 14.8486 0.269
sll0828 Reverse -48 -67 17.4269 0.225
sll0485 Reverse -103 -122 15.6125 0.267
sll0586 Forward -41 -22 16.8539 0.225
slr0623 Reverse -323 -342 16.8539 0.225
slr0311 Forward -248 -229 15.4215 0.267
slr0700 Reverse -88 -107 15.0396 0.269
ssl2667 Forward -274 -255 16.5674 0.255
slr0656 Reverse -130 -149 18.2863 0.225
sll1476 Forward -153 -134 15.326 0.267
slr1583 Reverse -29 -48 15.326 0.267
slr0747 Forward -29 -10 15.899 0.261
slr0749 Forward -101 -82 15.0396 0.269
slr0750 Reverse -154 -173 14.1801 0.28
slr1660 Reverse -185 -204 15.517 0.267
slr0449 Reverse -25 -44 15.135 0.269
sll5060 Reverse -54 -73 14.1801 0.28
sll5061 Reverse -235 -254 15.0396 0.269
slr7060 Reverse -249 -268 14.3711 0.28
sll7067 Reverse -261 -280 14.0846 0.284
slr7068 Forward -66 -47 14.0846 0.284
slr7097 Forward -295 -276 19.1457 0.214
slr6028 Reverse -184 -203 16.8539 0.225
slr6045 Forward -319 -300 15.4215 0.267
slr6087 Reverse -184 -203 16.8539 0.225
ORF Direction Start Stop Score q-value

TOMTOM

TOMTOM is an application for comparing motifs to known motifs in existing databases. Here's the possibility of running TOMTOM on this motif against the Prodoric or RegTransBase database. It can take up to 1 minute before the results show up, depending on server load. If you want to run TOMTOM against other databases, or with more custom settings, please visit the TOMTOM website.

Options

PSPM

0.556  0.389  0.056  0.000  
0.833 0.000 0.167 0.000
0.333 0.000 0.278 0.389
0.000 0.056 0.000 0.944
0.000 0.111 0.000 0.889
0.000 0.167 0.000 0.833
0.000 0.167 0.000 0.833
0.333 0.056 0.278 0.333
0.667 0.000 0.222 0.111
0.278 0.389 0.167 0.167
0.167 0.056 0.056 0.722
0.000 0.278 0.722 0.000
0.667 0.111 0.000 0.222
0.500 0.000 0.000 0.500
0.333 0.000 0.000 0.667
0.111 0.111 0.000 0.778
0.000 0.333 0.111 0.556
0.056 0.389 0.000 0.556
1.000 0.000 0.000 0.000
0.556 0.167 0.278 0.000