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Details for NP_442906.1_3

Name NP_442906.1_3
Length 20
Regular expression CA[CT]CT[GCT]CG[CG]CACATGGT[GT]GG
Central No

Motif logo

Genes containing this motif

17 unique genes found. Note that a gene can occur multiple times in the table below since a motif can be assigned to more than one position in its promoter.

Table filtering
ORF Direction Start Stop Score q-value
slr1087 Reverse -303 -322 9.3409 0.172
sll1639 Forward -64 -45 7.37428 0.2
sll1941 Forward -132 -113 4.81767 0.2
slr2042 Reverse -328 -347 4.81767 0.2
slr2136 Forward -80 -61 5.80098 0.2
sll1598 Forward -237 -218 10.1275 0.157
slr2103 Reverse -216 -235 4.12936 0.229
sll0754 Forward -91 -72 5.211 0.2
sll0318 Forward -396 -377 10.1275 0.157
slr0015 Forward -346 -327 10.1275 0.157
ssl0769 Reverse -317 -336 5.40766 0.2
slr0493 Reverse -196 -215 4.916 0.2
sll0797 Reverse -300 -319 11.2092 0.157
sll0666 Reverse -177 -196 10.1275 0.157
sll0738 Forward -195 -176 5.40766 0.2
sll1472 Reverse -286 -305 6.09597 0.2
sll0573 Reverse -269 -288 6.58763 0.2
ORF Direction Start Stop Score q-value

TOMTOM

TOMTOM is an application for comparing motifs to known motifs in existing databases. Here's the possibility of running TOMTOM on this motif against the Prodoric or RegTransBase database. It can take up to 1 minute before the results show up, depending on server load. If you want to run TOMTOM against other databases, or with more custom settings, please visit the TOMTOM website.

Options

PSPM

0.000  1.000  0.000  0.000  
0.857 0.143 0.000 0.000
0.000 0.714 0.000 0.286
0.000 0.857 0.000 0.143
0.000 0.000 0.000 1.000
0.000 0.286 0.429 0.286
0.000 1.000 0.000 0.000
0.000 0.000 1.000 0.000
0.143 0.571 0.286 0.000
0.000 0.857 0.143 0.000
0.857 0.143 0.000 0.000
0.000 1.000 0.000 0.000
1.000 0.000 0.000 0.000
0.000 0.000 0.143 0.857
0.000 0.000 1.000 0.000
0.000 0.000 1.000 0.000
0.000 0.000 0.000 1.000
0.143 0.000 0.429 0.429
0.000 0.000 1.000 0.000
0.000 0.143 0.857 0.000