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Details for NP_442893.1_3

Name NP_442893.1_3
Length 20
Regular expression CCT[AC][CT][GCT][TC][TA]A[AT][AC][TC]C[AC][AG]AT[GA][AC]T
Central No

Motif logo

Genes containing this motif

12 unique genes found. Note that a gene can occur multiple times in the table below since a motif can be assigned to more than one position in its promoter.

Table filtering
ORF Direction Start Stop Score q-value
slr1492 Reverse -129 -148 17.0099 0.157
slr0743a Reverse -81 -100 16.5182 0.158
slr1778 Forward -207 -188 15.8299 0.19
sll1285 Reverse -330 -349 21.6314 0.117
sll1242 Reverse -220 -239 17.9932 0.12
sll0327 Forward -306 -287 19.4681 0.12
slr0386 Reverse -10 -29 19.4681 0.12
slr1566 Forward -138 -119 16.5182 0.158
ssl7038 Reverse -305 -324 17.8948 0.12
ssl7039 Reverse -4 -23 17.8948 0.12
ssr7040 Forward -114 -95 17.8948 0.12
slr7041 Forward -356 -337 17.8948 0.12
ORF Direction Start Stop Score q-value

TOMTOM

TOMTOM is an application for comparing motifs to known motifs in existing databases. Here's the possibility of running TOMTOM on this motif against the Prodoric or RegTransBase database. It can take up to 1 minute before the results show up, depending on server load. If you want to run TOMTOM against other databases, or with more custom settings, please visit the TOMTOM website.

Options

PSPM

0.000  1.000  0.000  0.000  
0.000 1.000 0.000 0.000
0.000 0.000 0.000 1.000
0.556 0.444 0.000 0.000
0.000 0.778 0.000 0.222
0.111 0.222 0.444 0.222
0.000 0.333 0.111 0.556
0.222 0.000 0.000 0.778
0.889 0.111 0.000 0.000
0.778 0.000 0.000 0.222
0.778 0.222 0.000 0.000
0.000 0.444 0.000 0.556
0.000 0.889 0.000 0.111
0.667 0.333 0.000 0.000
0.667 0.111 0.222 0.000
0.889 0.000 0.111 0.000
0.111 0.111 0.000 0.778
0.222 0.111 0.556 0.111
0.556 0.333 0.111 0.000
0.111 0.000 0.111 0.778