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Details for NP_442876.1_7

Name NP_442876.1_7
Length 19
Regular expression [GA][AG][TA]GATT[TC][CT][AT][AG][CA][CA]AAT[TG][GT]C
Central Yes

Motif logo

Genes containing this motif

8 unique genes found. Note that a gene can occur multiple times in the table below since a motif can be assigned to more than one position in its promoter.

Table filtering
ORF Direction Start Stop Score q-value
slr2046 Forward -217 -199 17.2271 0.148
sll0759 Reverse -279 -297 14.3755 0.292
slr0211 Forward -188 -170 15.0638 0.292
sll0178 Reverse -148 -166 13.9821 0.292
sll0621 Reverse -318 -336 26.6668 0.00233
slr0664 Forward -217 -199 26.6668 0.00233
ssl5091 Reverse -178 -196 13.7855 0.292
ssr5092 Forward -194 -176 13.7855 0.292
ORF Direction Start Stop Score q-value

TOMTOM

TOMTOM is an application for comparing motifs to known motifs in existing databases. Here's the possibility of running TOMTOM on this motif against the Prodoric or RegTransBase database. It can take up to 1 minute before the results show up, depending on server load. If you want to run TOMTOM against other databases, or with more custom settings, please visit the TOMTOM website.

Options

PSPM

0.429  0.000  0.571  0.000  
0.714 0.000 0.286 0.000
0.429 0.000 0.000 0.571
0.000 0.000 1.000 0.000
1.000 0.000 0.000 0.000
0.000 0.000 0.143 0.857
0.143 0.000 0.000 0.857
0.000 0.286 0.000 0.714
0.000 0.571 0.000 0.429
0.571 0.000 0.000 0.429
0.714 0.000 0.286 0.000
0.429 0.571 0.000 0.000
0.429 0.571 0.000 0.000
1.000 0.000 0.000 0.000
1.000 0.000 0.000 0.000
0.000 0.000 0.000 1.000
0.000 0.000 0.286 0.714
0.000 0.000 0.714 0.286
0.143 0.857 0.000 0.000