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Details for NP_442828.1_8

Name NP_442828.1_8
Length 20
Regular expression TT[TC]AG[TA]GGA[GT]TTT[GT][TC][TG]G[GT]GG
Central No

Motif logo

Genes containing this motif

21 unique genes found. Note that a gene can occur multiple times in the table below since a motif can be assigned to more than one position in its promoter.

Table filtering
ORF Direction Start Stop Score q-value
slr1100 Forward -399 -380 29.4004 0.000109
slr2015 Reverse -47 -66 16.0274 0.2
sll1270 Forward -222 -203 13.8641 0.278
sll1590 Reverse -307 -326 15.4374 0.206
slr1728 Forward -32 -13 15.4374 0.206
sll0245 Reverse -13 -32 13.8641 0.278
slr0272 Forward -86 -67 14.5524 0.256
ssl0020 Forward -102 -83 13.4708 0.291
slr0016 Reverse -361 -380 13.4708 0.291
sll0404 Reverse -32 -51 19.0757 0.0877
slr0438 Forward -122 -103 19.0757 0.0877
slr0427 Forward -173 -154 14.6508 0.256
slr0075 Forward -271 -252 16.1257 0.2
slr0089 Reverse -190 -209 14.1591 0.277
sll0586 Forward -70 -51 20.354 0.0643
slr0623 Reverse -294 -313 20.354 0.0643
slr1419 Forward -36 -17 15.9291 0.2
sll1341 Forward -343 -324 16.8141 0.186
slr1426 Reverse -212 -231 16.8141 0.186
sll1338 Forward -313 -294 24.1889 0.0136
sll5109 Reverse -1 -20 21.3373 0.0616
ORF Direction Start Stop Score q-value

TOMTOM

TOMTOM is an application for comparing motifs to known motifs in existing databases. Here's the possibility of running TOMTOM on this motif against the Prodoric or RegTransBase database. It can take up to 1 minute before the results show up, depending on server load. If you want to run TOMTOM against other databases, or with more custom settings, please visit the TOMTOM website.

Options

PSPM

0.143  0.000  0.000  0.857  
0.143 0.000 0.000 0.857
0.000 0.286 0.000 0.714
0.857 0.000 0.000 0.143
0.143 0.000 0.857 0.000
0.429 0.000 0.000 0.571
0.000 0.000 0.857 0.143
0.143 0.000 0.857 0.000
0.857 0.000 0.143 0.000
0.143 0.000 0.429 0.429
0.000 0.000 0.143 0.857
0.143 0.143 0.143 0.571
0.000 0.143 0.000 0.857
0.000 0.000 0.571 0.429
0.000 0.286 0.000 0.714
0.000 0.000 0.429 0.571
0.000 0.000 1.000 0.000
0.143 0.000 0.571 0.286
0.143 0.000 0.857 0.000
0.143 0.000 0.714 0.143