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Details for NP_442826.1_6

Name NP_442826.1_6
Length 20
Regular expression [CA]G[AGC][AC]T[TC]GG[CGA]AT[CT][GA]G[CT][GC][CT][GTA]CC
Central Yes

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Genes containing this motif

9 unique genes found. Note that a gene can occur multiple times in the table below since a motif can be assigned to more than one position in its promoter.

Table filtering
ORF Direction Start Stop Score q-value
slr1006 Forward -289 -270 11.1109 0.254
slr0687 Reverse -324 -343 15.7324 0.122
slr1383 Reverse -240 -259 11.5042 0.254
sll1452 Forward -287 -268 16.4207 0.122
slr1240 Forward -320 -301 18.6823 0.0633
sll0210 Reverse -84 -103 14.7491 0.122
slr0216 Forward -31 -12 14.7491 0.122
sll0488 Forward -177 -158 10.1275 0.292
sll1340 Forward -343 -324 20.059 0.0633
ORF Direction Start Stop Score q-value

TOMTOM

TOMTOM is an application for comparing motifs to known motifs in existing databases. Here's the possibility of running TOMTOM on this motif against the Prodoric or RegTransBase database. It can take up to 1 minute before the results show up, depending on server load. If you want to run TOMTOM against other databases, or with more custom settings, please visit the TOMTOM website.

Options

PSPM

0.222  0.778  0.000  0.000  
0.000 0.000 0.889 0.111
0.444 0.222 0.333 0.000
0.667 0.333 0.000 0.000
0.000 0.000 0.000 1.000
0.000 0.444 0.000 0.556
0.000 0.000 1.000 0.000
0.000 0.000 1.000 0.000
0.222 0.333 0.333 0.111
1.000 0.000 0.000 0.000
0.000 0.000 0.000 1.000
0.000 0.556 0.000 0.444
0.222 0.000 0.778 0.000
0.000 0.111 0.889 0.000
0.000 0.556 0.000 0.444
0.000 0.333 0.667 0.000
0.000 0.778 0.000 0.222
0.222 0.111 0.333 0.333
0.000 1.000 0.000 0.000
0.000 1.000 0.000 0.000