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Details for NP_442821.1_2

Name NP_442821.1_2
Length 20
Regular expression GC[CA]GACAT[GAC]CCAATGCC[GC]CC
Central No

Motif logo

Genes containing this motif

53 unique genes found. Note that a gene can occur multiple times in the table below since a motif can be assigned to more than one position in its promoter.

Table filtering
ORF Direction Start Stop Score q-value
sll1398 Reverse -130 -149 11.0125 0.154
slr1106 Forward -361 -342 10.7175 0.154
slr1780 Forward -281 -262 21.2389 0.00952
sll1658 Forward -270 -251 0.687771 0.262
slr0967 Forward -98 -79 2.26107 0.245
sll0931 Forward -59 -40 2.26107 0.245
sll1020 Forward -160 -141 0.294447 0.283
sll1285 Forward -202 -183 3.34271 0.223
slr2015 Forward -28 -9 2.0644 0.248
sll1916 Forward -318 -299 4.71934 0.177
ssl2233 Reverse -313 -332 4.71934 0.177
slr1829 Reverse -230 -249 4.71934 0.177
sll1717 Reverse -274 -293 1.17943 0.248
sll2010 Reverse -101 -120 1.37609 0.248
sll0849 Reverse -142 -161 5.60432 0.177
ssr2912 Reverse -258 -277 0.687771 0.262
sll1252 Forward -389 -370 8.84924 0.177
sll1446 Reverse -91 -110 8.06259 0.177
slr1159 Reverse -260 -279 0.294447 0.283
slr1690 Forward -360 -341 3.53937 0.219
sll0909 Forward -343 -324 4.12936 0.194
sll1528 Reverse -244 -263 5.01433 0.177
sll1524 Forward -332 -313 1.47442 0.248
sll1861 Reverse -269 -288 1.17943 0.248
slr0379 Forward -70 -51 0.884433 0.262
slr0351 Reverse -355 -374 1.17943 0.248
sll0310 Reverse -347 -366 5.99764 0.177
slr0216 Forward -322 -303 6.29264 0.177
sll0412 Reverse -85 -104 0.687771 0.262
sll0053 Reverse -80 -99 4.81767 0.177
slr0069 Forward -38 -19 4.81767 0.177
sll0606 Forward -291 -272 1.37609 0.248
sll0378 Reverse -290 -309 2.85105 0.245
sll0830 Forward -252 -233 14.7491 0.0656
sll0080 Forward -52 -33 5.70265 0.177
slr0084 Reverse -194 -213 5.70265 0.177
slr0095 Reverse -380 -399 1.47442 0.248
sll0100 Forward -23 -4 5.70265 0.177
sll0794 Forward -367 -348 1.27776 0.248
sll0678 Reverse -243 -262 1.17943 0.248
smr0002 Reverse -282 -301 1.17943 0.248
slr0023 Reverse -155 -174 7.86593 0.177
sll1342 Forward -337 -318 34.8086 0.00000787
sll1366 Reverse -109 -128 5.50599 0.177
slr1559 Forward -329 -310 4.62101 0.177
slr0758 Forward -293 -274 2.55606 0.245
sll0444 Reverse -178 -197 4.81767 0.177
slr0590 Reverse -336 -355 2.3594 0.245
slr5054 Forward -286 -267 2.45773 0.245
sll7090 Forward -176 -157 5.30933 0.177
slr7092 Reverse -313 -332 5.30933 0.177
slr6006 Reverse -244 -263 1.27776 0.248
slr6065 Reverse -244 -263 1.27776 0.248
ORF Direction Start Stop Score q-value

TOMTOM

TOMTOM is an application for comparing motifs to known motifs in existing databases. Here's the possibility of running TOMTOM on this motif against the Prodoric or RegTransBase database. It can take up to 1 minute before the results show up, depending on server load. If you want to run TOMTOM against other databases, or with more custom settings, please visit the TOMTOM website.

Options

PSPM

0.000  0.000  1.000  0.000  
0.000 1.000 0.000 0.000
0.364 0.545 0.000 0.091
0.091 0.000 0.909 0.000
1.000 0.000 0.000 0.000
0.091 0.909 0.000 0.000
1.000 0.000 0.000 0.000
0.000 0.091 0.000 0.909
0.273 0.273 0.364 0.091
0.000 1.000 0.000 0.000
0.000 1.000 0.000 0.000
0.909 0.000 0.091 0.000
1.000 0.000 0.000 0.000
0.000 0.091 0.000 0.909
0.182 0.182 0.455 0.182
0.000 1.000 0.000 0.000
0.000 1.000 0.000 0.000
0.182 0.364 0.455 0.000
0.000 1.000 0.000 0.000
0.000 0.909 0.091 0.000