Your browser is old and dusty. Try Google Chrome!

Details for NP_442813.1_5

Name NP_442813.1_5
Length 20
Regular expression GG[TC]TGGG[AG][CAG]TT[TC]CC[CG][AG]TTCC
Central Yes

Motif logo

Genes containing this motif

117 unique genes found. Note that a gene can occur multiple times in the table below since a motif can be assigned to more than one position in its promoter.

Table filtering
ORF Direction Start Stop Score q-value
sll1213 Forward -309 -290 3.44104 0.269
sll1059 Reverse -262 -281 10.9142 0.133
sll0699 Forward -240 -221 10.2259 0.146
slr0740 Forward -208 -189 2.85105 0.275
sll0227 Forward -214 -195 6.39097 0.213
sll0224 Reverse -124 -143 2.0644 0.276
sll0219 Reverse -94 -113 7.86593 0.168
slr1417 Reverse -95 -114 2.0644 0.276
slr1096 Forward -232 -213 1.96607 0.276
slr1107 Reverse -185 -204 8.06259 0.168
slr1107 Forward -158 -139 4.42435 0.255
slr1107 Reverse -277 -296 1.17943 0.296
sll1196 Forward -249 -230 1.57275 0.292
slr1307 Forward -187 -168 3.73603 0.265
sll0939 Forward -264 -245 3.34271 0.27
sll0932 Reverse -340 -359 11.0125 0.133
sll0924 Reverse -214 -233 1.96607 0.276
slr1090 Reverse -99 -118 9.83255 0.148
sll0649 Forward -73 -54 9.83255 0.148
slr1051 Forward -380 -361 4.52268 0.254
ssr3465 Forward -309 -290 2.65439 0.275
slr2044 Reverse -190 -209 2.0644 0.276
ssr1698 Forward -113 -94 6.58763 0.213
slr1022 Forward -341 -322 2.0644 0.276
slr1380 Reverse -363 -382 7.86593 0.168
slr1380 Forward -342 -323 1.17943 0.296
sll1289 Forward -304 -285 1.17943 0.296
slr2007 Reverse -35 -54 17.7974 0.0431
slr1139 Forward -82 -63 5.99764 0.213
sll1078 Forward -248 -229 10.8159 0.133
slr1829 Forward -107 -88 11.8975 0.133
sll1713 Reverse -160 -179 4.62101 0.254
slr1223 Forward -236 -217 2.55606 0.275
slr0887 Reverse -80 -99 3.53937 0.269
sll0863 Reverse -139 -158 1.47442 0.292
sll0860 Forward -154 -135 0.982764 0.299
slr1877 Reverse -327 -346 3.44104 0.269
slr1808 Forward -322 -303 2.55606 0.275
sll1624 Reverse -51 -70 3.24438 0.27
sll0838 Forward -45 -26 7.17762 0.196
slr1249 Reverse -163 -182 2.45773 0.276
sll1151 Reverse -169 -188 1.17943 0.296
sll1908 Forward -105 -86 8.16093 0.168
slr1990 Reverse -156 -175 8.16093 0.168
slr1993 Forward -65 -46 4.32602 0.255
slr1998 Reverse -295 -314 2.3594 0.276
slr1998 Forward -198 -179 1.17943 0.296
sll1615 Forward -85 -66 3.83436 0.262
sll1612 Reverse -148 -167 1.86774 0.28
slr2102 Reverse -351 -370 5.50599 0.219
slr1505 Forward -277 -258 8.55425 0.168
sll1423 Forward -48 -29 9.14423 0.166
slr2126 Reverse -299 -318 1.0811 0.296
slr1331 Reverse -249 -268 2.26107 0.276
sll1869 Reverse -381 -400 5.60432 0.217
sll1432 Reverse -125 -144 1.37609 0.295
slr1533 Forward -58 -39 1.37609 0.295
slr1534 Reverse -80 -99 6.58763 0.213
slr1160 Reverse -312 -331 1.76941 0.282
sll1085 Reverse -154 -173 2.0644 0.276
slr1672 Reverse -157 -176 2.26107 0.276
slr1622 Reverse -101 -120 1.0811 0.296
slr1623 Forward -87 -68 0.982764 0.299
sll1537 Forward -382 -363 1.0811 0.296
slr1627 Reverse -96 -115 1.0811 0.296
slr0394 Forward -309 -290 4.32602 0.255
sll0361 Forward -258 -239 2.55606 0.275
slr0148 Reverse -139 -158 6.4893 0.213
slr0990 Forward -351 -332 2.3594 0.276
slr0337 Forward -30 -11 3.24438 0.27
sll0171 Forward -263 -244 1.76941 0.282
slr0384 Reverse -177 -196 17.0107 0.0431
slr0776 Reverse -49 -68 4.03102 0.262
sll0016 Forward -85 -66 16.8141 0.0431
slr0006 Reverse -314 -333 16.8141 0.0431
slr0213 Forward -51 -32 3.6377 0.265
slr0216 Forward -212 -193 9.53756 0.154
sll0063 Forward -180 -161 4.52268 0.254
slr0058 Reverse -364 -383 4.52268 0.254
sll0459 Forward -219 -200 6.29264 0.213
sll0603 Reverse -310 -329 13.3725 0.127
slr0417 Reverse -104 -123 5.89931 0.213
slr0895 Forward -334 -315 8.16093 0.168
sll0827 Forward -346 -327 3.24438 0.27
ssr1425 Reverse -232 -251 12.6841 0.133
ssr1425 Reverse -338 -357 5.80098 0.213
slr0096 Forward -76 -57 2.3594 0.276
slr0109 Reverse -131 -150 8.55425 0.168
sll0096 Reverse -88 -107 2.75272 0.275
sll0664 Forward -324 -305 3.04771 0.274
slr0710 Reverse -363 -382 3.04771 0.274
slr0528 Reverse -308 -327 2.94938 0.275
sll0513 Reverse -349 -368 1.47442 0.292
sll0896 Forward -202 -183 6.98095 0.202
ssl1004 Reverse -340 -359 3.93269 0.262
sll0520 Forward -395 -376 32.9403 0.00000338
sll0520 Forward -355 -336 11.7008 0.133
sll0520 Forward -200 -181 1.96607 0.276
sll1495 Reverse -330 -349 8.35759 0.168
smr0004 Forward -121 -102 5.80098 0.213
slr1656 Forward -380 -361 5.80098 0.213
slr1188 Reverse -32 -51 11.0125 0.133
slr1189 Reverse -35 -54 10.7175 0.133
sll1106 Forward -246 -227 5.60432 0.217
sll0576 Forward -375 -356 1.67108 0.287
sll0563 Reverse -196 -215 17.3057 0.0431
sll5036 Reverse -275 -294 5.80098 0.213
slr5038 Forward -266 -247 5.80098 0.213
ssl5045 Forward -294 -275 2.55606 0.275
ssl5068 Reverse -379 -398 2.55606 0.275
slr5093 Forward -275 -256 4.81767 0.252
sll7002 Forward -260 -241 5.01433 0.247
sll8018 Forward -119 -100 2.65439 0.275
slr8022 Forward -164 -145 2.0644 0.276
slr8036 Reverse -229 -248 11.6025 0.133
ssr6002 Reverse -289 -308 4.81767 0.252
ssl6018 Reverse -303 -322 3.83436 0.262
ssr6020 Forward -120 -101 3.83436 0.262
ssl6077 Reverse -303 -322 3.83436 0.262
ssr6079 Forward -120 -101 3.83436 0.262
slr6103 Reverse -321 -340 3.14605 0.274
6803t07 Reverse -251 -270 7.37428 0.19
6803t31 Reverse -175 -194 3.6377 0.265
6803t42 Reverse -102 -121 8.35759 0.168
ORF Direction Start Stop Score q-value

TOMTOM

TOMTOM is an application for comparing motifs to known motifs in existing databases. Here's the possibility of running TOMTOM on this motif against the Prodoric or RegTransBase database. It can take up to 1 minute before the results show up, depending on server load. If you want to run TOMTOM against other databases, or with more custom settings, please visit the TOMTOM website.

Options

PSPM

0.000  0.000  1.000  0.000  
0.000 0.000 1.000 0.000
0.045 0.364 0.091 0.500
0.000 0.000 0.000 1.000
0.000 0.000 1.000 0.000
0.000 0.000 1.000 0.000
0.045 0.000 0.864 0.091
0.545 0.091 0.364 0.000
0.273 0.318 0.273 0.136
0.000 0.045 0.000 0.955
0.000 0.045 0.000 0.955
0.000 0.455 0.000 0.545
0.000 0.909 0.091 0.000
0.000 0.909 0.000 0.091
0.136 0.500 0.273 0.091
0.591 0.045 0.364 0.000
0.000 0.000 0.000 1.000
0.000 0.136 0.182 0.682
0.000 1.000 0.000 0.000
0.000 1.000 0.000 0.000