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Details for NP_442809.1_3

Name NP_442809.1_3
Length 20
Regular expression A[GC]CA[GA][CG]A[GA]CA[CG][AGC][CG][TA][GC]A[TGC][CG][CAG][CG]
Central No

Motif logo

Genes containing this motif

7 unique genes found. Note that a gene can occur multiple times in the table below since a motif can be assigned to more than one position in its promoter.

Table filtering
ORF Direction Start Stop Score q-value
slr2121 Forward -110 -91 16.9115 0.239
sll0260 Forward -110 -91 17.8948 0.186
ssr0482 Reverse -180 -199 17.8948 0.186
sll0763 Forward -393 -374 19.4681 0.156
sll0762 Forward -77 -58 19.4681 0.156
slr0058 Forward -69 -50 19.1731 0.156
slr0922 Reverse -94 -113 19.4681 0.156
ORF Direction Start Stop Score q-value

TOMTOM

TOMTOM is an application for comparing motifs to known motifs in existing databases. Here's the possibility of running TOMTOM on this motif against the Prodoric or RegTransBase database. It can take up to 1 minute before the results show up, depending on server load. If you want to run TOMTOM against other databases, or with more custom settings, please visit the TOMTOM website.

Options

PSPM

0.857  0.143  0.000  0.000  
0.000 0.214 0.643 0.143
0.000 1.000 0.000 0.000
0.929 0.071 0.000 0.000
0.357 0.000 0.500 0.143
0.000 0.786 0.214 0.000
1.000 0.000 0.000 0.000
0.214 0.000 0.786 0.000
0.000 1.000 0.000 0.000
0.786 0.143 0.071 0.000
0.000 0.643 0.357 0.000
0.500 0.214 0.286 0.000
0.143 0.643 0.214 0.000
0.357 0.000 0.071 0.571
0.000 0.429 0.500 0.071
0.929 0.071 0.000 0.000
0.000 0.214 0.286 0.500
0.000 0.500 0.357 0.143
0.286 0.500 0.214 0.000
0.000 0.500 0.500 0.000