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Details for NP_442801.1_5

Name NP_442801.1_5
Length 18
Regular expression [TG][GC]C[GT][GA]A[GAT][ACT]T[GC][AC][AG][GC][AT]ATT[TG]
Central No

Motif logo

Genes containing this motif

10 unique genes found. Note that a gene can occur multiple times in the table below since a motif can be assigned to more than one position in its promoter.

Table filtering
ORF Direction Start Stop Score q-value
slr1195 Reverse -261 -278 13.9027 0.248
sll1304 Forward -228 -211 13.4111 0.272
sll1758 Forward -36 -19 16.1643 0.116
ssr3184 Reverse -132 -149 16.1643 0.116
ssl3769 Forward -199 -182 14.886 0.18
sll1255 Reverse -120 -137 18.7209 0.116
slr1349 Forward -341 -324 16.656 0.116
ssl0707 Reverse -121 -138 16.8527 0.116
slr0404 Forward -182 -165 16.8527 0.116
slr0552 Forward -90 -73 17.1476 0.116
ORF Direction Start Stop Score q-value

TOMTOM

TOMTOM is an application for comparing motifs to known motifs in existing databases. Here's the possibility of running TOMTOM on this motif against the Prodoric or RegTransBase database. It can take up to 1 minute before the results show up, depending on server load. If you want to run TOMTOM against other databases, or with more custom settings, please visit the TOMTOM website.

Options

PSPM

0.000  0.000  0.200  0.800  
0.000 0.400 0.600 0.000
0.000 1.000 0.000 0.000
0.000 0.000 0.800 0.200
0.400 0.000 0.600 0.000
1.000 0.000 0.000 0.000
0.200 0.000 0.600 0.200
0.600 0.200 0.000 0.200
0.000 0.000 0.000 1.000
0.000 0.200 0.800 0.000
0.800 0.200 0.000 0.000
0.800 0.000 0.200 0.000
0.000 0.200 0.800 0.000
0.800 0.000 0.000 0.200
1.000 0.000 0.000 0.000
0.000 0.000 0.000 1.000
0.000 0.000 0.000 1.000
0.000 0.000 0.200 0.800