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Details for NP_442765.1_4

Name NP_442765.1_4
Length 20
Regular expression GG[GA][AT][AT]GGC[CAT][TG][GC][GA][TG][GA][AG]AA[GC]GC
Central No

Motif logo

Genes containing this motif

14 unique genes found. Note that a gene can occur multiple times in the table below since a motif can be assigned to more than one position in its promoter.

Table filtering
ORF Direction Start Stop Score q-value
slr1485 Reverse -205 -224 15.7324 0.244
sll1945 Reverse -147 -166 13.5691 0.244
slr2033 Forward -89 -70 13.5691 0.244
ssr3452 Forward -31 -12 14.6508 0.244
sll1553 Forward -99 -80 14.2574 0.244
slr1697 Reverse -185 -204 14.2574 0.244
slr0953 Forward -365 -346 13.0775 0.244
sll0888 Reverse -181 -200 12.4875 0.26
sll0728 Reverse -207 -226 12.5858 0.26
slr0608 Forward -71 -52 13.1758 0.244
ssl7039 Reverse -143 -162 14.5524 0.244
slr7041 Forward -217 -198 14.5524 0.244
6803r02 Forward -187 -168 13.3725 0.244
6803r05 Forward -187 -168 13.3725 0.244
ORF Direction Start Stop Score q-value

TOMTOM

TOMTOM is an application for comparing motifs to known motifs in existing databases. Here's the possibility of running TOMTOM on this motif against the Prodoric or RegTransBase database. It can take up to 1 minute before the results show up, depending on server load. If you want to run TOMTOM against other databases, or with more custom settings, please visit the TOMTOM website.

Options

PSPM

0.000  0.000  1.000  0.000  
0.111 0.000 0.889 0.000
0.444 0.000 0.556 0.000
0.667 0.111 0.000 0.222
0.778 0.000 0.000 0.222
0.111 0.111 0.667 0.111
0.111 0.000 0.889 0.000
0.111 0.889 0.000 0.000
0.333 0.444 0.000 0.222
0.000 0.000 0.444 0.556
0.000 0.333 0.556 0.111
0.222 0.000 0.778 0.000
0.000 0.000 0.222 0.778
0.222 0.000 0.778 0.000
0.444 0.000 0.444 0.111
0.889 0.000 0.000 0.111
1.000 0.000 0.000 0.000
0.000 0.333 0.556 0.111
0.000 0.000 1.000 0.000
0.000 1.000 0.000 0.000