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Details for NP_442765.1_2

Name NP_442765.1_2
Length 20
Regular expression TG[CG]A[GT][TC]TCCAC[CA]A[GA]CA[GA][CT]TC
Central No

Motif logo

Genes containing this motif

10 unique genes found. Note that a gene can occur multiple times in the table below since a motif can be assigned to more than one position in its promoter.

Table filtering
ORF Direction Start Stop Score q-value
slr1315 Reverse -146 -165 11.2092 0.115
sll1401 Forward -45 -26 5.60432 0.239
slr0983 Forward -357 -338 7.47261 0.212
slr2045 Reverse -219 -238 4.32602 0.275
ssr2549 Forward -246 -227 21.3373 0.0146
sll1432 Forward -124 -105 10.9142 0.115
slr1533 Reverse -59 -78 10.9142 0.115
slr0708 Reverse -214 -233 5.01433 0.247
slr0534 Reverse -172 -191 10.5209 0.115
slr7099 Forward -300 -281 5.70265 0.239
ORF Direction Start Stop Score q-value

TOMTOM

TOMTOM is an application for comparing motifs to known motifs in existing databases. Here's the possibility of running TOMTOM on this motif against the Prodoric or RegTransBase database. It can take up to 1 minute before the results show up, depending on server load. If you want to run TOMTOM against other databases, or with more custom settings, please visit the TOMTOM website.

Options

PSPM

0.000  0.000  0.000  1.000  
0.000 0.000 1.000 0.000
0.000 0.750 0.250 0.000
1.000 0.000 0.000 0.000
0.125 0.000 0.625 0.250
0.000 0.375 0.000 0.625
0.000 0.000 0.000 1.000
0.000 1.000 0.000 0.000
0.125 0.875 0.000 0.000
1.000 0.000 0.000 0.000
0.000 1.000 0.000 0.000
0.375 0.625 0.000 0.000
1.000 0.000 0.000 0.000
0.250 0.000 0.750 0.000
0.125 0.875 0.000 0.000
1.000 0.000 0.000 0.000
0.375 0.000 0.625 0.000
0.000 0.750 0.000 0.250
0.000 0.000 0.000 1.000
0.000 1.000 0.000 0.000