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Details for NP_442690.1_5

Name NP_442690.1_5
Length 20
Regular expression [CG]A[GA][AG]C[CGT]TTG[GA]T[CG][GA]A[ACT]GA[CG]G[GA]
Central Yes

Motif logo

Genes containing this motif

11 unique genes found. Note that a gene can occur multiple times in the table below since a motif can be assigned to more than one position in its promoter.

Table filtering
ORF Direction Start Stop Score q-value
sll1061 Forward -332 -313 11.4058 0.285
sll1327 Forward -184 -165 14.3558 0.13
sll1676 Forward -400 -381 16.4207 0.13
slr1787 Reverse -200 -219 16.4207 0.13
slr1073 Reverse -188 -207 14.2574 0.13
sll1425 Reverse -274 -293 14.7491 0.13
slr1266 Reverse -175 -194 14.2574 0.13
sll1166 Forward -324 -305 14.0608 0.13
sll0686 Reverse -9 -28 15.3391 0.13
slr0582 Forward -32 -13 21.5339 0.0689
sll0506 Forward -395 -376 13.9625 0.13
ORF Direction Start Stop Score q-value

TOMTOM

TOMTOM is an application for comparing motifs to known motifs in existing databases. Here's the possibility of running TOMTOM on this motif against the Prodoric or RegTransBase database. It can take up to 1 minute before the results show up, depending on server load. If you want to run TOMTOM against other databases, or with more custom settings, please visit the TOMTOM website.

Options

PSPM

0.111  0.556  0.333  0.000  
0.889 0.111 0.000 0.000
0.333 0.000 0.556 0.111
0.556 0.000 0.444 0.000
0.000 1.000 0.000 0.000
0.000 0.444 0.333 0.222
0.000 0.000 0.000 1.000
0.000 0.000 0.000 1.000
0.000 0.000 1.000 0.000
0.444 0.000 0.556 0.000
0.000 0.000 0.000 1.000
0.000 0.667 0.333 0.000
0.222 0.111 0.667 0.000
1.000 0.000 0.000 0.000
0.444 0.333 0.000 0.222
0.000 0.000 0.889 0.111
1.000 0.000 0.000 0.000
0.111 0.556 0.222 0.111
0.000 0.111 0.889 0.000
0.222 0.000 0.778 0.000