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Details for NP_442588.1_2

Name NP_442588.1_2
Length 20
Regular expression C[AC][AG]CC[CG][AT]TGCC[GC][AC]GC[TC]T[CT][GC][AG]
Central Yes

Motif logo

Genes containing this motif

10 unique genes found. Note that a gene can occur multiple times in the table below since a motif can be assigned to more than one position in its promoter.

Table filtering
ORF Direction Start Stop Score q-value
slr1780 Reverse -166 -185 17.6007 0.117
sll0932 Reverse -326 -345 15.2408 0.167
sll0656 Reverse -311 -330 13.7658 0.233
ssr2962 Forward -397 -378 13.1758 0.263
slr1998 Forward -239 -220 14.7491 0.178
slr1943 Reverse -179 -198 17.7974 0.117
slr0522 Reverse -334 -353 15.6341 0.167
ssl5065 Reverse -106 -125 16.5191 0.142
ssl7039 Forward -240 -221 21.3373 0.0542
slr7041 Reverse -120 -139 21.3373 0.0542
ORF Direction Start Stop Score q-value

TOMTOM

TOMTOM is an application for comparing motifs to known motifs in existing databases. Here's the possibility of running TOMTOM on this motif against the Prodoric or RegTransBase database. It can take up to 1 minute before the results show up, depending on server load. If you want to run TOMTOM against other databases, or with more custom settings, please visit the TOMTOM website.

Options

PSPM

0.167  0.833  0.000  0.000  
0.500 0.500 0.000 0.000
0.417 0.083 0.417 0.083
0.000 1.000 0.000 0.000
0.000 0.833 0.000 0.167
0.000 0.667 0.333 0.000
0.500 0.167 0.000 0.333
0.000 0.000 0.000 1.000
0.000 0.000 1.000 0.000
0.167 0.750 0.000 0.083
0.167 0.667 0.000 0.167
0.000 0.250 0.667 0.083
0.667 0.333 0.000 0.000
0.000 0.000 1.000 0.000
0.000 0.917 0.000 0.083
0.000 0.333 0.167 0.500
0.000 0.000 0.000 1.000
0.000 0.667 0.000 0.333
0.000 0.417 0.583 0.000
0.667 0.000 0.333 0.000