Your browser is old and dusty. Try Google Chrome!

Details for NP_442588.1_1

Name NP_442588.1_1
Length 20
Regular expression AA[CT][TG][GC]C[GC][CT]CGGCT[GT][CT]C[AC]TGG
Central No

Motif logo

Genes containing this motif

131 unique genes found. Note that a gene can occur multiple times in the table below since a motif can be assigned to more than one position in its promoter.

Table filtering
ORF Direction Start Stop Score q-value
slr1312 Reverse -47 -66 15.3391 0.131
slr1485 Reverse -248 -267 7.17762 0.259
slr0724 Forward -217 -198 7.47261 0.258
slr0743a Reverse -172 -191 6.19431 0.272
slr0237 Forward -393 -374 11.7008 0.158
slr0238 Forward -149 -130 9.53756 0.225
sll0227 Reverse -278 -297 10.4225 0.199
sll1678 Forward -120 -101 8.55425 0.228
sll1676 Reverse -182 -201 6.19431 0.272
sll1659 Forward -399 -380 5.70265 0.281
slr1799 Reverse -350 -369 5.70265 0.281
slr1062 Reverse -325 -344 7.7676 0.25
sll0647 Reverse -158 -177 6.39097 0.267
slr0688 Forward -192 -173 10.2259 0.208
sll0635 Reverse -348 -367 8.45592 0.228
slr1608 Forward -386 -367 5.50599 0.281
slr1042 Reverse -74 -93 7.86593 0.249
slr1759 Forward -384 -365 7.96426 0.249
slr1847 Forward -230 -211 17.2074 0.131
sll1946 Reverse -235 -254 12.1925 0.145
sll1833 Reverse -46 -65 6.68596 0.263
sll0986 Reverse -225 -244 9.43923 0.225
sll1292 Reverse -147 -166 8.84924 0.226
sll1286 Reverse -310 -329 5.30933 0.29
sll1568 Forward -365 -346 6.39097 0.267
sll1071 Reverse -304 -323 8.65258 0.228
sll1070 Forward -179 -160 8.45592 0.228
sll1812 Reverse -46 -65 6.29264 0.272
ssr2009 Reverse -346 -365 6.4893 0.265
ssl2823 Forward -270 -251 8.94757 0.226
ssl3177 Forward -354 -335 10.9142 0.177
sll1135 Reverse -125 -144 13.5691 0.143
slr1232 Forward -29 -10 13.5691 0.143
slr1237 Forward -201 -182 5.30933 0.29
sll1130 Forward -307 -288 12.8808 0.145
ssl2245 Forward -44 -25 12.8808 0.145
sll1359 Reverse -214 -233 11.7008 0.158
sll1282 Forward -276 -257 7.17762 0.259
sll1267 Reverse -12 -31 7.66927 0.253
ssr1480 Forward -314 -295 11.1109 0.174
sll0871 Reverse -379 -398 9.63589 0.225
sll0868 Reverse -48 -67 6.78429 0.259
ssl2598 Forward -103 -84 19.5673 0.125
sll1755 Forward -226 -207 11.4058 0.165
sll2011 Forward -400 -381 6.4893 0.265
sll1709 Reverse -279 -298 6.88262 0.259
slr1738 Forward -328 -309 5.211 0.296
slr0853 Reverse -296 -315 16.6174 0.131
sll0851 Forward -163 -144 8.84924 0.226
slr1260 Reverse -223 -242 5.50599 0.281
sll1950 Reverse -192 -211 16.1257 0.131
slr1993 Forward -306 -287 6.78429 0.259
slr1729 Forward -338 -319 14.7491 0.143
slr0263 Forward -372 -353 12.9791 0.145
ssl0453 Forward -120 -101 6.78429 0.259
slr2098 Forward -390 -371 9.73422 0.225
slr2105 Forward -348 -329 12.8808 0.145
slr0809 Reverse -304 -323 16.6174 0.131
sll1884 Reverse -310 -329 13.7658 0.143
sll1873 Reverse -18 -37 19.6656 0.125
slr1983 Forward -328 -309 12.3892 0.145
sll1870 Reverse -258 -277 5.60432 0.281
slr1274 Reverse -231 -250 5.99764 0.272
slr1673 Forward -152 -133 8.65258 0.228
slr1675 Forward -387 -368 9.63589 0.225
sll1556 Reverse -205 -224 7.47261 0.258
slr1690 Forward -399 -380 6.98095 0.259
sll1522 Reverse -241 -260 6.4893 0.265
slr0287 Forward -155 -136 6.4893 0.265
slr1945 Forward -76 -57 10.5209 0.197
ssr3307 Reverse -287 -306 7.86593 0.249
ssl1807 Reverse -61 -80 8.25926 0.235
slr0323 Forward -321 -302 11.6025 0.159
sll0169 Forward -359 -340 8.84924 0.226
sll0163 Reverse -269 -288 6.98095 0.259
sll0329 Reverse -220 -239 9.14423 0.226
slr0773 Reverse -135 -154 15.3391 0.131
sll0767 Forward -112 -93 6.58763 0.265
sll0008 Reverse -57 -76 7.96426 0.249
slr0055 Forward -289 -270 11.7992 0.158
sll0053 Forward -135 -116 5.70265 0.281
sll0459 Forward -260 -241 7.27595 0.259
slr0487 Forward -247 -228 5.50599 0.281
sll0683 Forward -368 -349 12.2908 0.145
sll0613 Reverse -229 -248 5.60432 0.281
slr0634 Reverse -369 -388 18.6823 0.125
sll0371 Forward -201 -182 9.93088 0.224
slr0191 Reverse -323 -342 15.9291 0.131
slr0197 Reverse -253 -272 8.94757 0.226
ssr0330 Reverse -195 -214 8.65258 0.228
slr0902 Forward -277 -258 9.0459 0.226
slr0922 Reverse -338 -357 12.7825 0.145
sll0555 Forward -86 -67 5.70265 0.281
sll0546 Forward -349 -330 10.9142 0.177
ssr1398 Reverse -224 -243 9.24257 0.226
slr0081 Reverse -101 -120 5.60432 0.281
slr0506 Reverse -131 -150 6.19431 0.272
slr0516 Reverse -179 -198 7.7676 0.25
sll0473 Reverse -186 -205 5.50599 0.281
slr0115 Forward -272 -253 7.07928 0.259
sll0092 Reverse -261 -280 9.0459 0.226
slr0794 Reverse -174 -193 6.88262 0.259
sll0785 Reverse -118 -137 13.7658 0.143
ssl1255 Forward -375 -356 7.57094 0.257
sll0042 Reverse -325 -344 5.80098 0.281
sll0037 Forward -62 -43 12.2908 0.145
sll0034 Forward -128 -109 12.1925 0.145
sll0518 Forward -227 -208 6.78429 0.259
sll0517 Reverse -350 -369 5.99764 0.272
sll0506 Reverse -207 -226 13.5691 0.143
sll0524 Forward -226 -207 11.1109 0.174
sll0522 Reverse -159 -178 9.43923 0.225
slr1559 Reverse -304 -323 5.40766 0.287
slr1563 Reverse -69 -88 13.6675 0.143
sll1483 Reverse -244 -263 9.43923 0.225
sll1479 Reverse -162 -181 8.45592 0.228
sll1470 Reverse -324 -343 5.89931 0.277
sll0441 Forward -183 -164 7.27595 0.259
slr1179 Reverse -302 -321 7.27595 0.259
slr1189 Forward -375 -356 9.14423 0.226
slr0608 Reverse -311 -330 14.1591 0.143
sll5033 Forward -204 -185 6.98095 0.259
sll5047 Reverse -160 -179 8.35759 0.231
sll5089 Reverse -47 -66 6.09597 0.272
ssl7039 Reverse -204 -223 6.88262 0.259
slr7041 Forward -156 -137 6.88262 0.259
sll7077 Forward -69 -50 12.3892 0.145
sll8031 Reverse -291 -310 5.99764 0.272
slr6005 Reverse -74 -93 6.09597 0.272
slr6051 Forward -298 -279 12.4875 0.145
slr6064 Reverse -74 -93 6.09597 0.272
ORF Direction Start Stop Score q-value

TOMTOM

TOMTOM is an application for comparing motifs to known motifs in existing databases. Here's the possibility of running TOMTOM on this motif against the Prodoric or RegTransBase database. It can take up to 1 minute before the results show up, depending on server load. If you want to run TOMTOM against other databases, or with more custom settings, please visit the TOMTOM website.

Options

PSPM

1.000  0.000  0.000  0.000  
0.667 0.000 0.167 0.167
0.000 0.583 0.000 0.417
0.000 0.000 0.333 0.667
0.000 0.333 0.667 0.000
0.000 0.750 0.167 0.083
0.000 0.250 0.667 0.083
0.000 0.583 0.083 0.333
0.000 0.833 0.083 0.083
0.000 0.000 1.000 0.000
0.000 0.000 1.000 0.000
0.167 0.667 0.000 0.167
0.000 0.000 0.000 1.000
0.000 0.000 0.667 0.333
0.000 0.667 0.000 0.333
0.167 0.500 0.167 0.167
0.667 0.250 0.000 0.083
0.167 0.167 0.000 0.667
0.000 0.000 1.000 0.000
0.000 0.000 1.000 0.000