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Details for NP_442553.1_4

Name NP_442553.1_4
Length 20
Regular expression [AG]GC[CT]CA[GA][CA]AA[CT]T[GA]GG[GC]ATGG
Central Yes

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Genes containing this motif

35 unique genes found. Note that a gene can occur multiple times in the table below since a motif can be assigned to more than one position in its promoter.

Table filtering
ORF Direction Start Stop Score q-value
sll1212 Forward -73 -54 13.2741 0.164
sll1212 Reverse -363 -382 8.06259 0.273
slr1311 Forward -244 -225 8.06259 0.273
sll0226 Forward -316 -297 7.37428 0.29
ssr3000 Reverse -290 -309 10.9142 0.209
sll0634 Forward -354 -335 7.7676 0.273
sll1584 Forward -350 -331 18.9773 0.0455
sll1121 Reverse -110 -129 18.289 0.0478
slr1536 Forward -384 -365 9.83255 0.235
sll1704 Forward -330 -311 14.7491 0.115
slr2001 Reverse -313 -332 10.4225 0.23
slr2002 Reverse -375 -394 11.4058 0.19
slr1723 Forward -154 -135 26.6471 0.00491
sll1254 Reverse -278 -297 12.3892 0.179
sll1879 Reverse -226 -245 10.2259 0.231
ssr1600 Reverse -65 -84 8.75091 0.264
sll0296 Forward -127 -108 7.7676 0.273
sll0208 Reverse -320 -339 8.75091 0.264
slr0210 Forward -51 -32 9.63589 0.239
sll0887 Reverse -93 -112 9.43923 0.243
slr0904 Reverse -326 -345 8.06259 0.273
sll0082 Forward -341 -322 11.7992 0.179
sll0586 Reverse -299 -318 20.059 0.0397
slr0623 Forward -65 -46 20.059 0.0397
slr0110 Reverse -243 -262 9.0459 0.262
sll0671 Forward -209 -190 12.7825 0.177
sll0507 Reverse -293 -312 7.47261 0.289
slr0656 Reverse -245 -264 7.86593 0.273
slr1562 Reverse -209 -228 15.3391 0.109
sll0736 Reverse -122 -141 8.06259 0.273
sll5033 Reverse -129 -148 14.5524 0.115
sll7003 Reverse -46 -65 9.93088 0.235
ssl7039 Reverse -128 -147 11.9958 0.179
slr7041 Forward -232 -213 11.9958 0.179
sll8033 Reverse -279 -298 15.9291 0.102
6803t07 Forward -277 -258 8.25926 0.273
ORF Direction Start Stop Score q-value

TOMTOM

TOMTOM is an application for comparing motifs to known motifs in existing databases. Here's the possibility of running TOMTOM on this motif against the Prodoric or RegTransBase database. It can take up to 1 minute before the results show up, depending on server load. If you want to run TOMTOM against other databases, or with more custom settings, please visit the TOMTOM website.

Options

PSPM

0.692  0.000  0.308  0.000  
0.000 0.000 1.000 0.000
0.000 0.923 0.077 0.000
0.077 0.538 0.077 0.308
0.000 1.000 0.000 0.000
1.000 0.000 0.000 0.000
0.385 0.000 0.615 0.000
0.385 0.615 0.000 0.000
1.000 0.000 0.000 0.000
0.615 0.154 0.154 0.077
0.000 0.615 0.154 0.231
0.000 0.000 0.000 1.000
0.308 0.154 0.462 0.077
0.000 0.077 0.923 0.000
0.000 0.000 0.846 0.154
0.154 0.231 0.538 0.077
1.000 0.000 0.000 0.000
0.077 0.000 0.000 0.923
0.154 0.000 0.846 0.000
0.000 0.000 1.000 0.000