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Details for NP_442552.1_9

Name NP_442552.1_9
Length 20
Regular expression G[CT]G[CG][CT][GA]GT[TG]G[CT]GA[TC][CG][TG]G[CGT][CG][GC]
Central No

Motif logo

Genes containing this motif

11 unique genes found. Note that a gene can occur multiple times in the table below since a motif can be assigned to more than one position in its promoter.

Table filtering
ORF Direction Start Stop Score q-value
sll1027 Forward -330 -311 16.0274 0.117
sll1681 Forward -222 -203 17.2074 0.103
sll1123 Forward -80 -61 17.109 0.103
slr1329 Reverse -380 -399 18.1907 0.102
sll1447 Forward -235 -216 19.174 0.0993
sll0614 Reverse -89 -108 14.4541 0.172
slr0426 Reverse -321 -340 16.0274 0.117
sgl0001 Forward -222 -203 13.1758 0.255
sll0586 Forward -133 -114 18.9773 0.0993
slr0623 Reverse -231 -250 18.9773 0.0993
slr0711 Reverse -366 -385 15.2408 0.141
ORF Direction Start Stop Score q-value

TOMTOM

TOMTOM is an application for comparing motifs to known motifs in existing databases. Here's the possibility of running TOMTOM on this motif against the Prodoric or RegTransBase database. It can take up to 1 minute before the results show up, depending on server load. If you want to run TOMTOM against other databases, or with more custom settings, please visit the TOMTOM website.

Options

PSPM

0.000  0.000  1.000  0.000  
0.000 0.667 0.000 0.333
0.111 0.000 0.889 0.000
0.000 0.778 0.222 0.000
0.111 0.556 0.000 0.333
0.222 0.000 0.778 0.000
0.000 0.000 1.000 0.000
0.111 0.000 0.000 0.889
0.000 0.000 0.222 0.778
0.000 0.000 1.000 0.000
0.000 0.667 0.111 0.222
0.000 0.111 0.889 0.000
1.000 0.000 0.000 0.000
0.000 0.333 0.111 0.556
0.111 0.556 0.222 0.111
0.111 0.111 0.333 0.444
0.111 0.000 0.889 0.000
0.000 0.333 0.333 0.333
0.000 0.667 0.333 0.000
0.000 0.444 0.556 0.000