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Details for NP_442552.1_5

Name NP_442552.1_5
Length 20
Regular expression GT[GAC][TCG]T[GC]C[GA][TCA][AGC]A[GC]G[AC][GA]GGC[AG]C
Central Yes

Motif logo

Genes containing this motif

2 unique genes found. Note that a gene can occur multiple times in the table below since a motif can be assigned to more than one position in its promoter.

Table filtering
ORF Direction Start Stop Score q-value
sll0586 Forward -181 -162 19.764 0.0568
slr0623 Reverse -183 -202 19.764 0.0568
ORF Direction Start Stop Score q-value

TOMTOM

TOMTOM is an application for comparing motifs to known motifs in existing databases. Here's the possibility of running TOMTOM on this motif against the Prodoric or RegTransBase database. It can take up to 1 minute before the results show up, depending on server load. If you want to run TOMTOM against other databases, or with more custom settings, please visit the TOMTOM website.

Options

PSPM

0.000  0.000  1.000  0.000  
0.000 0.000 0.000 1.000
0.222 0.222 0.556 0.000
0.000 0.333 0.222 0.444
0.000 0.000 0.111 0.889
0.000 0.444 0.556 0.000
0.000 0.889 0.000 0.111
0.222 0.000 0.778 0.000
0.222 0.333 0.000 0.444
0.444 0.222 0.333 0.000
1.000 0.000 0.000 0.000
0.000 0.222 0.667 0.111
0.000 0.000 1.000 0.000
0.778 0.222 0.000 0.000
0.222 0.000 0.778 0.000
0.000 0.000 0.889 0.111
0.000 0.000 1.000 0.000
0.111 0.778 0.111 0.000
0.778 0.000 0.222 0.000
0.000 1.000 0.000 0.000