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Details for NP_442529.1_4

Name NP_442529.1_4
Length 20
Regular expression GA[TA][CG][AT][GA][AC]TG[TA]G[CT]GATC[AG][ACG]CT
Central No

Motif logo

Genes containing this motif

174 unique genes found. Note that a gene can occur multiple times in the table below since a motif can be assigned to more than one position in its promoter.

Table filtering
ORF Direction Start Stop Score q-value
slr1489 Forward -133 -114 7.07928 0.3
slr1493 Forward -379 -360 18.7807 0.149
slr1494 Forward -261 -242 8.55425 0.277
sll1394 Forward -254 -235 8.84924 0.255
sll0716 Forward -310 -291 11.3075 0.198
sll0704 Reverse -64 -83 12.2908 0.175
slr0732 Forward -112 -93 12.2908 0.175
slr0740 Reverse -99 -118 11.7008 0.175
slr1411 Reverse -110 -129 7.37428 0.289
sll1325 Forward -80 -61 14.7491 0.172
sll1040 Forward -346 -327 7.7676 0.288
slr1105 Reverse -338 -357 9.53756 0.235
slr1306 Reverse -311 -330 8.06259 0.278
ssl1792 Forward -322 -303 11.7992 0.175
slr1065 Forward -385 -366 9.73422 0.235
slr1083 Reverse -55 -74 14.9458 0.167
sll1025 Forward -113 -94 7.96426 0.278
slr0686 Forward -288 -269 16.0274 0.154
slr1047 Reverse -2 -21 10.3242 0.227
slr1053 Forward -149 -130 11.7992 0.175
slr1849 Reverse -370 -389 7.37428 0.289
sll1942 Forward -105 -86 8.45592 0.277
slr2041 Forward -399 -380 8.16093 0.278
slr2044 Reverse -80 -99 8.06259 0.278
slr1910 Reverse -300 -319 8.06259 0.278
ssl1911 Reverse -168 -187 7.37428 0.289
sll0997 Forward -287 -268 8.35759 0.277
sll1285 Reverse -166 -185 16.2241 0.154
slr2018 Forward -392 -373 12.0942 0.175
sll1917 Forward -365 -346 13.3725 0.175
sll1915 Reverse -182 -201 9.3409 0.235
sll1078 Forward -35 -16 17.699 0.149
slr1149 Forward -234 -215 7.57094 0.289
sll1804 Reverse -345 -364 9.93088 0.235
sll1801 Forward -299 -280 8.25926 0.278
sll1792 Forward -283 -264 13.4708 0.175
sll1123 Reverse -332 -351 11.7992 0.175
slr1197 Forward -328 -309 9.73422 0.235
ssr2009 Forward -244 -225 12.7825 0.175
slr1200 Forward -398 -379 7.66927 0.289
slr2075 Forward -200 -181 7.66927 0.289
sll1462 Forward -114 -95 8.16093 0.278
slr1443 Forward -44 -25 15.9291 0.154
sll1353 Forward -246 -227 7.96426 0.278
sll1281 Forward -35 -16 12.9791 0.175
slr1362 Forward -277 -258 7.47261 0.289
sll0867 Forward -306 -287 7.7676 0.288
ssl2598 Reverse -179 -198 8.45592 0.277
slr1407 Reverse -311 -330 8.65258 0.27
sll1783 Forward -93 -74 11.0125 0.208
ssl3379 Forward -287 -268 7.37428 0.289
sll2015 Reverse -137 -156 10.2259 0.227
sll1697 Reverse -322 -341 8.06259 0.278
sll1626 Forward -155 -136 13.9625 0.175
sll1625 Forward -184 -165 10.8159 0.22
sll0847 Forward -379 -360 7.17762 0.3
sll0839 Reverse -66 -85 9.53756 0.235
slr1246 Forward -288 -269 13.4708 0.175
slr2000 Reverse -114 -133 7.37428 0.289
slr1722 Reverse -306 -325 12.7825 0.175
slr2099 Forward -287 -268 9.24257 0.235
slr2099 Forward -389 -370 7.07928 0.3
slr2101 Reverse -180 -199 10.7175 0.221
sll1424 Reverse -133 -152 11.2092 0.199
sll1234 Forward -83 -64 7.86593 0.283
ssr2201 Reverse -198 -217 7.86593 0.283
slr1332 Reverse -73 -92 11.7008 0.175
sll0811 Forward -337 -318 10.1275 0.229
sll1262 Reverse -330 -349 13.3725 0.175
sll1260 Forward -131 -112 12.5858 0.175
slr1336 Reverse -352 -371 12.5858 0.175
sll1876 Forward -378 -359 7.07928 0.3
slr1272 Reverse -88 -107 7.37428 0.289
sll1172 Forward -193 -174 10.4225 0.227
slr1279 Reverse -90 -109 10.4225 0.227
slr1530 Forward -185 -166 13.1758 0.175
slr1159 Reverse -370 -389 12.6841 0.175
sll1091 Forward -101 -82 7.96426 0.278
slr1167 Reverse -281 -300 7.96426 0.278
slr1173 Reverse -240 -259 7.27595 0.294
sll1562 Forward -365 -346 11.2092 0.199
sll1559 Reverse -193 -212 12.3892 0.175
slr1686 Forward -98 -79 12.3892 0.175
slr0941 Reverse -307 -326 8.06259 0.278
ssr1600 Reverse -75 -94 9.93088 0.235
sll1537 Forward -359 -340 13.7658 0.175
slr1627 Reverse -119 -138 13.7658 0.175
sll0274 Reverse -252 -271 9.24257 0.235
slr0280 Reverse -100 -119 7.07928 0.3
sll0269 Reverse -202 -221 10.2259 0.227
sll0263 Forward -107 -88 7.07928 0.3
sll0261 Reverse -176 -195 10.3242 0.227
slr0284 Forward -123 -104 10.3242 0.227
slr0286 Forward -331 -312 12.3892 0.175
slr0291 Reverse -371 -390 7.47261 0.289
slr0147 Reverse -132 -151 10.5209 0.227
sll0149 Reverse -347 -366 17.404 0.149
sll0145 Forward -128 -109 9.53756 0.235
ssl0242 Forward -309 -290 9.3409 0.235
slr1001 Forward -87 -68 9.3409 0.235
ssr0256 Reverse -203 -222 9.3409 0.235
slr0166 Reverse -378 -397 9.3409 0.235
slr1934 Reverse -219 -238 7.17762 0.3
sll1841 Reverse -119 -138 8.84924 0.255
slr1949 Forward -92 -73 8.84924 0.255
slr0326 Reverse -90 -109 9.43923 0.235
ssl0564 Forward -360 -341 10.2259 0.227
slr0361 Forward -119 -100 7.27595 0.294
slr0772 Forward -264 -245 7.96426 0.278
slr1003 Reverse -342 -361 11.7992 0.175
slr0018 Forward -82 -63 20.1573 0.134
sll0008 Reverse -371 -390 8.35759 0.277
slr0049 Reverse -115 -134 8.06259 0.278
slr0058 Reverse -86 -105 8.35759 0.277
slr0489 Forward -171 -152 10.7175 0.221
sll0454 Reverse -371 -390 9.14423 0.237
slr0643 Forward -278 -259 9.43923 0.235
slr0645 Reverse -173 -192 14.5524 0.175
sll0398 Reverse -250 -269 8.06259 0.278
sll0396 Forward -276 -257 9.53756 0.235
sll0377 Reverse -360 -379 9.53756 0.235
slr0924 Forward -314 -295 9.83255 0.235
sll0834 Reverse -153 -172 12.5858 0.175
sll0825 Reverse -172 -191 7.37428 0.289
slr0844 Forward -292 -273 7.37428 0.289
slr0079 Reverse -334 -353 16.2241 0.154
slr0081 Forward -263 -244 20.5506 0.134
sll0480 Forward -209 -190 7.66927 0.289
slr0509 Reverse -363 -382 12.8808 0.175
slr0518 Forward -216 -197 10.4225 0.227
slr0520 Forward -86 -67 16.2241 0.154
sll0467 Forward -170 -151 9.24257 0.235
slr0103 Reverse -261 -280 7.96426 0.278
sll0092 Reverse -96 -115 8.45592 0.277
slr0118 Forward -160 -141 8.45592 0.277
slr0318 Forward -271 -252 17.8957 0.149
slr0319 Reverse -319 -338 17.7974 0.149
sll0788 Reverse -259 -278 13.4708 0.175
slr0800 Forward -283 -264 13.4708 0.175
sll0786 Reverse -21 -40 12.6841 0.175
sll0780 Reverse -237 -256 12.3892 0.175
sll0498 Forward -254 -235 10.0292 0.235
slr1420 Reverse -11 -30 8.16093 0.278
slr1451 Forward -159 -140 7.07928 0.3
sll0626 Reverse -203 -222 9.53756 0.235
sll1495 Reverse -306 -325 12.0942 0.175
sll1471 Reverse -290 -309 16.8141 0.154
sll0729 Forward -257 -238 11.7008 0.175
ssr2781 Forward -143 -124 15.0441 0.167
slr0585 Forward -309 -290 7.47261 0.289
sll0564 Forward -227 -208 11.7008 0.175
slr0599 Reverse -160 -179 11.7008 0.175
slr0608 Reverse -101 -120 10.5209 0.227
sll5002 Forward -329 -310 12.7825 0.175
sll5028 Reverse -190 -209 9.83255 0.235
slr5029 Forward -219 -200 9.83255 0.235
slr5058 Reverse -311 -330 7.57094 0.289
slr5073 Reverse -229 -248 12.3892 0.175
slr5111 Reverse -283 -302 13.2741 0.175
ssl7007 Reverse -297 -316 9.14423 0.237
slr7008 Forward -353 -334 9.14423 0.237
ssl7074 Reverse -108 -127 11.1109 0.203
sll8032 Reverse -30 -49 9.93088 0.235
slr6011 Forward -269 -250 7.47261 0.289
slr6013 Reverse -216 -235 7.37428 0.289
ssr6032 Reverse -164 -183 14.9458 0.167
slr6033 Reverse -183 -202 14.9458 0.167
slr6045 Forward -241 -222 8.35759 0.277
slr6070 Forward -269 -250 7.47261 0.289
slr6072 Reverse -216 -235 7.37428 0.289
slr6091 Reverse -183 -202 14.9458 0.167
slr6103 Reverse -27 -46 10.1275 0.229
6803t28 Reverse -164 -183 11.7992 0.175
6803t31 Reverse -277 -296 9.24257 0.235
6803t42 Reverse -78 -97 12.0942 0.175
ORF Direction Start Stop Score q-value

TOMTOM

TOMTOM is an application for comparing motifs to known motifs in existing databases. Here's the possibility of running TOMTOM on this motif against the Prodoric or RegTransBase database. It can take up to 1 minute before the results show up, depending on server load. If you want to run TOMTOM against other databases, or with more custom settings, please visit the TOMTOM website.

Options

PSPM

0.050  0.100  0.850  0.000  
0.850 0.100 0.050 0.000
0.300 0.150 0.000 0.550
0.050 0.600 0.350 0.000
0.600 0.050 0.050 0.300
0.300 0.100 0.450 0.150
0.600 0.300 0.000 0.100
0.000 0.000 0.050 0.950
0.050 0.150 0.800 0.000
0.250 0.000 0.050 0.700
0.000 0.000 1.000 0.000
0.050 0.550 0.000 0.400
0.000 0.050 0.950 0.000
1.000 0.000 0.000 0.000
0.000 0.100 0.100 0.800
0.000 1.000 0.000 0.000
0.550 0.000 0.450 0.000
0.400 0.300 0.250 0.050
0.000 0.850 0.000 0.150
0.000 0.000 0.000 1.000