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Details for NP_442508.1_10

Name NP_442508.1_10
Length 20
Regular expression CAC[TA][CT]C[TC]C[AC][CA][AC][TC][GCT]CC[TA]CA[CA]C
Central No

Motif logo

Genes containing this motif

7 unique genes found. Note that a gene can occur multiple times in the table below since a motif can be assigned to more than one position in its promoter.

Table filtering
ORF Direction Start Stop Score q-value
slr1311 Forward -200 -181 5.99684 0.29
sll1536 Reverse -333 -352 9.14342 0.217
slr1629 Forward -208 -189 9.14342 0.217
sll0586 Reverse -165 -184 12.88 0.128
slr0623 Forward -199 -180 12.88 0.128
sll1106 Reverse -136 -155 8.65176 0.217
slr1192 Forward -64 -45 8.65176 0.217
ORF Direction Start Stop Score q-value

TOMTOM

TOMTOM is an application for comparing motifs to known motifs in existing databases. Here's the possibility of running TOMTOM on this motif against the Prodoric or RegTransBase database. It can take up to 1 minute before the results show up, depending on server load. If you want to run TOMTOM against other databases, or with more custom settings, please visit the TOMTOM website.

Options

PSPM

0.000  1.000  0.000  0.000  
1.000 0.000 0.000 0.000
0.000 1.000 0.000 0.000
0.250 0.000 0.000 0.750
0.000 0.750 0.000 0.250
0.000 1.000 0.000 0.000
0.000 0.250 0.000 0.750
0.000 1.000 0.000 0.000
0.750 0.250 0.000 0.000
0.250 0.750 0.000 0.000
0.750 0.250 0.000 0.000
0.000 0.250 0.000 0.750
0.000 0.250 0.500 0.250
0.000 1.000 0.000 0.000
0.000 1.000 0.000 0.000
0.250 0.000 0.000 0.750
0.000 1.000 0.000 0.000
1.000 0.000 0.000 0.000
0.250 0.750 0.000 0.000
0.000 1.000 0.000 0.000