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Details for NP_442503.1_10

Name NP_442503.1_10
Length 20
Regular expression CAG[CT]TC[CA][CA]C[AC][CTA][CGT][ACG]T[CG][ACG]GG[GC]A
Central No

Motif logo

Genes containing this motif

8 unique genes found. Note that a gene can occur multiple times in the table below since a motif can be assigned to more than one position in its promoter.

Table filtering
ORF Direction Start Stop Score q-value
ssr3189 Reverse -253 -272 16.1257 0.286
sll0909 Reverse -74 -93 18.0924 0.273
slr0951 Forward -143 -124 18.0924 0.273
sll0325 Forward -66 -47 17.0107 0.279
slr0342 Reverse -157 -176 17.0107 0.279
slr0520 Forward -92 -73 16.5191 0.285
slr0619 Reverse -353 -372 20.4523 0.273
sll0518 Forward -386 -367 18.7807 0.273
ORF Direction Start Stop Score q-value

TOMTOM

TOMTOM is an application for comparing motifs to known motifs in existing databases. Here's the possibility of running TOMTOM on this motif against the Prodoric or RegTransBase database. It can take up to 1 minute before the results show up, depending on server load. If you want to run TOMTOM against other databases, or with more custom settings, please visit the TOMTOM website.

Options

PSPM

0.000  0.833  0.167  0.000  
1.000 0.000 0.000 0.000
0.000 0.000 1.000 0.000
0.000 0.750 0.000 0.250
0.000 0.000 0.000 1.000
0.167 0.667 0.000 0.167
0.333 0.583 0.083 0.000
0.333 0.667 0.000 0.000
0.167 0.833 0.000 0.000
0.333 0.333 0.167 0.167
0.250 0.333 0.083 0.333
0.083 0.333 0.333 0.250
0.333 0.250 0.250 0.167
0.000 0.000 0.000 1.000
0.000 0.667 0.333 0.000
0.333 0.333 0.250 0.083
0.000 0.000 1.000 0.000
0.000 0.167 0.667 0.167
0.083 0.333 0.583 0.000
1.000 0.000 0.000 0.000