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Details for NP_442450.1_8

Name NP_442450.1_8
Length 20
Regular expression [AG]A[AGT]A[GA][CAT][GT][AT][CA][TA][GT][AC]AA[AT][AC]TT[CA][AC]
Central No

Motif logo

Genes containing this motif

20 unique genes found. Note that a gene can occur multiple times in the table below since a motif can be assigned to more than one position in its promoter.

Table filtering
ORF Direction Start Stop Score q-value
sll1203 Reverse -362 -381 17.1404 0.191
ssr1155 Reverse -343 -362 15.9945 0.224
sll0871 Forward -250 -231 17.2359 0.191
slr0884 Reverse -66 -85 17.2359 0.191
sll0861 Reverse -32 -51 15.135 0.294
slr2058 Forward -336 -317 17.1404 0.191
slr1957 Reverse -101 -120 20.4826 0.191
slr0395 Forward -160 -141 16.7584 0.191
slr0144 Reverse -273 -292 15.517 0.262
slr0907 Reverse -158 -177 15.9945 0.224
sll0830 Forward -194 -175 17.2359 0.191
ssr0871 Forward -61 -42 16.6629 0.191
slr0511 Forward -275 -256 16.6629 0.191
slr0099 Forward -66 -47 16.6629 0.191
sll0038 Reverse -79 -98 16.9494 0.191
slr0031 Forward -171 -152 16.9494 0.191
sll0494 Forward -252 -233 17.5223 0.191
sll0494 Reverse -55 -74 16.5674 0.191
sll1485 Reverse -99 -118 19.2412 0.191
slr1651 Reverse -75 -94 19.9096 0.191
slr7059 Reverse -60 -79 17.0449 0.191
ORF Direction Start Stop Score q-value

TOMTOM

TOMTOM is an application for comparing motifs to known motifs in existing databases. Here's the possibility of running TOMTOM on this motif against the Prodoric or RegTransBase database. It can take up to 1 minute before the results show up, depending on server load. If you want to run TOMTOM against other databases, or with more custom settings, please visit the TOMTOM website.

Options

PSPM

0.600  0.000  0.400  0.000  
1.000 0.000 0.000 0.000
0.400 0.000 0.400 0.200
0.900 0.000 0.000 0.100
0.400 0.000 0.600 0.000
0.300 0.400 0.000 0.300
0.100 0.000 0.700 0.200
0.600 0.100 0.100 0.200
0.200 0.800 0.000 0.000
0.300 0.000 0.000 0.700
0.100 0.100 0.400 0.400
0.600 0.300 0.000 0.100
0.800 0.100 0.100 0.000
0.900 0.000 0.000 0.100
0.600 0.000 0.100 0.300
0.700 0.300 0.000 0.000
0.000 0.000 0.000 1.000
0.000 0.000 0.000 1.000
0.400 0.500 0.000 0.100
0.800 0.200 0.000 0.000