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Details for NP_442445.1_2

Name NP_442445.1_2
Length 20
Regular expression CAA[TC][CG][AG][CA][ACT]T[TC][AGT]GCAA[TAC]ATT[CT]
Central No

Motif logo

Genes containing this motif

61 unique genes found. Note that a gene can occur multiple times in the table below since a motif can be assigned to more than one position in its promoter.

Table filtering
ORF Direction Start Stop Score q-value
slr1318 Forward -151 -132 19.5673 0.128
sll1203 Reverse -245 -264 9.53756 0.288
sll1325 Reverse -347 -366 17.5024 0.19
sll1039 Forward -323 -304 11.3075 0.288
slr1799 Forward -311 -292 9.63589 0.288
slr0964 Forward -60 -41 24.9755 0.0117
slr1066 Reverse -279 -298 8.25926 0.288
sll0635 Reverse -230 -249 11.0125 0.288
sll1509 Forward -175 -156 8.06259 0.288
slr1599 Reverse -191 -210 8.06259 0.288
sll1640 Reverse -316 -335 11.8975 0.288
sll1913 Reverse -42 -61 9.83255 0.288
slr1134 Reverse -280 -299 7.96426 0.288
sll1068 Reverse -267 -286 7.96426 0.288
slr1890 Forward -146 -127 7.96426 0.288
slr2077 Reverse -33 -52 7.96426 0.288
sll1455 Forward -341 -322 7.96426 0.288
sll2002 Reverse -338 -357 13.2741 0.288
slr0852 Forward -198 -179 9.24257 0.288
sll0854 Forward -383 -364 8.06259 0.288
slr1259 Reverse -103 -122 9.63589 0.288
sll0249 Reverse -69 -88 8.75091 0.288
sll0247 Forward -347 -328 10.1275 0.288
slr0267 Reverse -163 -182 10.1275 0.288
sll0236 Reverse -250 -269 10.9142 0.288
slr2116 Forward -328 -309 10.4225 0.288
slr2131 Reverse -45 -64 9.24257 0.288
slr1282 Reverse -259 -278 9.53756 0.288
sll1432 Reverse -339 -358 11.6025 0.288
slr1534 Forward -230 -211 11.6025 0.288
sll1099 Reverse -86 -105 7.86593 0.291
slr1644 Reverse -329 -348 12.4875 0.288
slr0142 Forward -272 -253 9.73422 0.288
slr0157 Forward -216 -197 12.2908 0.288
sll0296 Forward -190 -171 12.1925 0.288
sll0403 Forward -157 -138 8.35759 0.288
slr0439 Reverse -154 -173 8.35759 0.288
sll0063 Reverse -375 -394 10.2259 0.288
slr0058 Forward -169 -150 10.2259 0.288
sll0394 Reverse -332 -351 16.6174 0.191
slr0919 Forward -255 -236 16.1257 0.191
slr0835 Forward -89 -70 8.06259 0.288
sll0672 Reverse -30 -49 8.55425 0.288
sll0671 Reverse -244 -263 9.24257 0.288
sll0737 Forward -377 -358 9.0459 0.288
slr1463 Reverse -150 -169 9.14423 0.288
slr0661 Forward -219 -200 9.73422 0.288
slr1575 Reverse -325 -344 14.4541 0.288
sll1109 Forward -123 -104 9.3409 0.288
ssl5007 Reverse -190 -209 8.45592 0.288
ssr5009 Forward -325 -306 8.45592 0.288
ssl5025 Forward -69 -50 9.0459 0.288
slr5093 Forward -253 -234 11.7008 0.288
sll8027 Reverse -17 -36 10.9142 0.288
ssl8039 Reverse -206 -225 8.55425 0.288
ssr6002 Reverse -190 -209 8.45592 0.288
slr6011 Reverse -290 -309 8.35759 0.288
sll6060 Forward -366 -347 8.45592 0.288
ssl6061 Forward -126 -107 8.45592 0.288
ssr6062 Reverse -190 -209 8.45592 0.288
slr6070 Reverse -290 -309 8.35759 0.288
ORF Direction Start Stop Score q-value

TOMTOM

TOMTOM is an application for comparing motifs to known motifs in existing databases. Here's the possibility of running TOMTOM on this motif against the Prodoric or RegTransBase database. It can take up to 1 minute before the results show up, depending on server load. If you want to run TOMTOM against other databases, or with more custom settings, please visit the TOMTOM website.

Options

PSPM

0.000  0.889  0.000  0.111  
1.000 0.000 0.000 0.000
0.889 0.000 0.111 0.000
0.000 0.444 0.000 0.556
0.000 0.667 0.333 0.000
0.778 0.000 0.222 0.000
0.222 0.778 0.000 0.000
0.444 0.222 0.111 0.222
0.111 0.000 0.000 0.889
0.000 0.444 0.000 0.556
0.556 0.000 0.222 0.222
0.000 0.000 1.000 0.000
0.111 0.667 0.111 0.111
1.000 0.000 0.000 0.000
0.889 0.000 0.000 0.111
0.222 0.222 0.000 0.556
1.000 0.000 0.000 0.000
0.000 0.000 0.000 1.000
0.000 0.111 0.000 0.889
0.000 0.556 0.111 0.333