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Details for NP_442437.1_3

Name NP_442437.1_3
Length 20
Regular expression C[AG]ATC[AC]C[CA]A[CG][CGA][AG]G[CT][TA][GC][CG]TG[GA]
Central Yes

Motif logo

Genes containing this motif

101 unique genes found. Note that a gene can occur multiple times in the table below since a motif can be assigned to more than one position in its promoter.

Table filtering
ORF Direction Start Stop Score q-value
sll1395 Forward -147 -128 10.2251 0.254
slr1117 Forward -71 -52 13.9616 0.129
slr0242 Reverse -276 -295 11.6017 0.193
slr1415 Forward -308 -289 9.93006 0.262
slr1109 Reverse -377 -396 9.7334 0.265
sll1659 Forward -254 -235 9.43841 0.284
slr1303 Forward -128 -109 9.93006 0.262
slr0985 Forward -363 -344 11.7 0.193
slr1074 Reverse -204 -223 11.8967 0.193
slr0692 Reverse -225 -244 13.7649 0.136
sll1515 Reverse -255 -274 10.815 0.222
slr1597 Forward -88 -69 10.815 0.222
slr1045 Forward -184 -165 12.29 0.178
sll1006 Reverse -31 -50 9.63507 0.272
sll1937 Reverse -367 -386 14.9449 0.106
sll0998 Forward -228 -209 12.4867 0.17
slr2010 Reverse -64 -83 11.995 0.193
sll1819 Forward -348 -329 11.7 0.193
ssl3441 Forward -264 -245 19.0748 0.098
sll1796 Forward -207 -188 11.2084 0.211
ssl3712 Forward -262 -243 16.4199 0.106
sll1740 Reverse -290 -309 10.815 0.222
slr1219 Forward -157 -138 9.93006 0.262
slr0878 Reverse -297 -316 11.6017 0.193
sll0871 Forward -225 -206 15.9282 0.106
slr0884 Reverse -91 -110 15.9282 0.106
slr1879 Reverse -256 -275 13.2733 0.154
slr1256 Forward -236 -217 9.83173 0.264
sll1959 Reverse -31 -50 22.3197 0.083
sll1599 Reverse -283 -302 13.3716 0.154
sll0248 Reverse -130 -149 11.3067 0.207
sll0241 Forward -285 -266 10.9134 0.222
sll1414 Reverse -88 -107 9.93006 0.262
ssr2549 Forward -46 -27 9.93006 0.262
slr0813 Reverse -349 -368 19.8614 0.088
ssl3580 Forward -126 -107 11.7 0.193
ssl3580 Reverse -137 -156 9.24175 0.295
slr1288 Forward -309 -290 9.93006 0.262
sll1436 Forward -349 -330 11.11 0.216
slr1159 Reverse -355 -374 9.43841 0.284
slr0947 Forward -147 -128 11.0117 0.222
slr0952 Forward -327 -308 9.24175 0.295
sll1540 Forward -370 -351 14.9449 0.106
slr1646 Forward -231 -212 14.9449 0.106
slr0445 Reverse -271 -290 14.5516 0.11
sll0274 Reverse -126 -145 10.7167 0.227
slr0164 Forward -282 -263 18.0915 0.106
slr1934 Reverse -213 -232 16.0265 0.106
slr0322 Forward -55 -36 9.24175 0.295
sll0175 Forward -261 -242 13.2733 0.154
sll0156 Forward -58 -39 15.4366 0.106
slr0184 Reverse -145 -164 15.4366 0.106
slr0369 Forward -90 -71 11.7 0.193
slr0380 Forward -186 -167 21.0414 0.083
sll0330 Forward -172 -153 12.7816 0.166
sll0322 Forward -97 -78 9.7334 0.265
ssl0769 Reverse -316 -335 12.4867 0.17
slr0066 Reverse -52 -71 12.585 0.17
slr0492 Forward -126 -107 10.6184 0.233
slr0634 Forward -63 -44 18.8781 0.098
sll0189 Forward -69 -50 16.8132 0.106
ssr0332 Forward -38 -19 16.7149 0.106
slr0211 Forward -322 -303 16.7149 0.106
slr0897 Reverse -350 -369 11.8967 0.193
ssr1527 Forward -218 -199 9.7334 0.265
slr0920 Reverse -247 -266 11.8967 0.193
sll0542 Forward -276 -257 10.9134 0.222
slr0825 Forward -191 -172 14.3549 0.116
sll0823 Forward -209 -190 10.4217 0.244
sll0482 Reverse -163 -182 13.9616 0.129
slr0795 Reverse -103 -122 20.3531 0.083
slr0711 Reverse -160 -179 10.815 0.222
ssl1255 Reverse -241 -260 15.2399 0.106
sll0499 Forward -172 -153 12.9783 0.16
slr0544 Reverse -256 -275 12.9783 0.16
ssl1707 Forward -229 -210 14.5516 0.11
sll1329 Reverse -270 -289 9.83173 0.264
slr0656 Forward -38 -19 10.0284 0.262
sll1498 Reverse -209 -228 12.9783 0.16
slr0752 Forward -179 -160 15.2399 0.106
slr0755 Reverse -200 -219 12.585 0.17
sll0448 Reverse -265 -284 9.53674 0.279
slr0455 Reverse -171 -190 12.6833 0.169
sll1107 Forward -172 -153 9.83173 0.264
slr0604 Reverse -318 -337 13.175 0.157
ssr5019 Reverse -187 -206 11.3067 0.207
ssl5027 Forward -149 -130 15.6332 0.106
sll5057 Forward -261 -242 10.52 0.238
ssl5114 Reverse -226 -245 11.3067 0.207
ssr5121 Reverse -229 -248 10.2251 0.254
ssr7018 Reverse -369 -388 14.7483 0.106
ssr7018 Reverse -296 -315 14.7483 0.106
ssr7018 Reverse -224 -243 14.7483 0.106
ssr7018 Reverse -152 -171 14.7483 0.106
ssr7018 Reverse -80 -99 14.7483 0.106
ssr7018 Reverse -11 -30 14.7483 0.106
ssl7019 Forward -349 -330 14.7483 0.106
ssl7019 Forward -275 -256 14.7483 0.106
ssl7019 Forward -197 -178 14.7483 0.106
ssl7019 Forward -123 -104 14.7483 0.106
ssl7019 Forward -49 -30 14.7483 0.106
ssl7020 Forward -350 -331 14.7483 0.106
ssl7020 Forward -276 -257 14.7483 0.106
ssl7020 Forward -203 -184 14.7483 0.106
ssl7020 Forward -133 -114 14.7483 0.106
ssl7020 Forward -60 -41 14.7483 0.106
ssl7021 Forward -112 -93 14.7483 0.106
ssl7021 Forward -44 -25 14.7483 0.106
slr7023 Reverse -375 -394 14.7483 0.106
sll6017 Reverse -17 -36 11.6017 0.193
slr6044 Reverse -161 -180 20.3531 0.083
sll6053 Forward -357 -338 10.3234 0.25
sll6076 Reverse -17 -36 11.6017 0.193
slr6107 Forward -218 -199 18.7798 0.098
6803t02 Reverse -123 -142 12.3883 0.174
6803t42 Reverse -255 -274 12.88 0.163
ORF Direction Start Stop Score q-value

TOMTOM

TOMTOM is an application for comparing motifs to known motifs in existing databases. Here's the possibility of running TOMTOM on this motif against the Prodoric or RegTransBase database. It can take up to 1 minute before the results show up, depending on server load. If you want to run TOMTOM against other databases, or with more custom settings, please visit the TOMTOM website.

Options

PSPM

0.000  0.857  0.143  0.000  
0.429 0.000 0.429 0.143
0.857 0.000 0.000 0.143
0.000 0.000 0.000 1.000
0.143 0.857 0.000 0.000
0.429 0.429 0.143 0.000
0.000 1.000 0.000 0.000
0.357 0.571 0.071 0.000
0.929 0.000 0.071 0.000
0.143 0.357 0.357 0.143
0.214 0.500 0.286 0.000
0.786 0.000 0.214 0.000
0.071 0.000 0.786 0.143
0.000 0.500 0.000 0.500
0.429 0.000 0.000 0.571
0.000 0.214 0.786 0.000
0.000 0.643 0.214 0.143
0.143 0.143 0.000 0.714
0.143 0.000 0.857 0.000
0.286 0.000 0.714 0.000