Your browser is old and dusty. Try Google Chrome!

Details for NP_442400.1_1

Name NP_442400.1_1
Length 20
Regular expression GC[CG]AG[CT]GAT[ACT][GC]CCG[TC]TT[TA]CC
Central No

Motif logo

Genes containing this motif

104 unique genes found. Note that a gene can occur multiple times in the table below since a motif can be assigned to more than one position in its promoter.

Table filtering
ORF Direction Start Stop Score q-value
slr1489 Reverse -177 -196 -4.6221 0.266
slr0729 Forward -56 -37 -5.01543 0.283
ssl0410 Forward -70 -51 -2.55715 0.243
slr1772 Reverse -226 -245 -3.93378 0.253
sll1667 Forward -250 -231 10.3242 0.11
sll1666 Reverse -87 -106 -4.72043 0.275
sll1664 Reverse -312 -331 -2.75381 0.243
ssr1604 Reverse -59 -78 -4.6221 0.266
slr0964 Forward -229 -210 2.94938 0.179
ssl1784 Forward -267 -248 3.44104 0.166
slr0984 Reverse -104 -123 -5.80207 0.299
slr1081 Reverse -83 -102 -5.31042 0.295
sll0656 Reverse -333 -352 -5.40875 0.297
sll1002 Forward -253 -234 -4.6221 0.266
slr1763 Reverse -177 -196 -5.31042 0.295
sll1934 Forward -314 -295 -5.31042 0.295
sll0994 Reverse -267 -286 5.30933 0.121
sll0992 Reverse -255 -274 4.81767 0.126
sll1298 Forward -79 -60 -6.09707 0.299
ssr2315 Reverse -193 -212 -6.09707 0.299
sll1584 Reverse -254 -273 -6.1954 0.299
slr2012 Forward -249 -230 2.0644 0.203
sll1801 Reverse -278 -297 -5.80207 0.299
sll1740 Reverse -155 -174 -6.09707 0.299
slr1830 Forward -349 -330 3.73603 0.159
sll1726 Forward -153 -134 2.45773 0.193
slr1844 Reverse -60 -79 2.85105 0.179
slr1440 Forward -245 -226 4.22769 0.133
sll1358 Reverse -314 -333 -6.1954 0.299
sll1348 Reverse -316 -335 -6.09707 0.299
slr1365 Forward -221 -202 -6.09707 0.299
ssr3189 Reverse -307 -326 -2.45882 0.243
slr1885 Reverse -66 -85 -4.13045 0.266
sll2009 Forward -70 -51 -4.91709 0.283
sll1692 Reverse -267 -286 -5.60541 0.299
slr1819 Forward -228 -209 -5.60541 0.299
slr0870 Forward -277 -258 2.26107 0.198
sll1150 Forward -360 -341 -4.42544 0.266
slr2004 Reverse -42 -61 2.94938 0.179
sll1590 Reverse -284 -303 -5.99873 0.299
slr1728 Forward -55 -36 -5.99873 0.299
ssr3532 Reverse -240 -259 -3.63879 0.243
sll1987 Reverse -284 -303 -6.1954 0.299
slr2105 Reverse -340 -359 -3.44213 0.243
sll1240 Forward -246 -227 -5.01543 0.283
slr0808 Reverse -122 -141 4.71934 0.126
sll0803 Forward -123 -104 -4.81876 0.279
slr1343 Forward -274 -255 -5.70374 0.299
slr1348 Forward -400 -381 -4.42544 0.266
sll1899 Forward -211 -192 -6.09707 0.299
slr1274 Forward -22 -3 -2.26216 0.243
slr1672 Reverse -158 -177 -5.70374 0.299
slr1679 Reverse -241 -260 -4.91709 0.283
slr1689 Reverse -154 -173 -6.1954 0.299
slr1697 Reverse -355 -374 -5.40875 0.297
slr0938 Forward -211 -192 -4.32711 0.266
slr0940 Reverse -250 -269 -4.81876 0.279
slr0959 Forward -347 -328 -5.99873 0.299
slr0284 Reverse -376 -395 -6.1954 0.299
slr1926 Reverse -13 -32 5.89931 0.11
slr1940 Reverse -77 -96 -5.11376 0.288
ssl0563 Reverse -248 -267 -5.9004 0.299
slr0331 Forward -121 -102 -5.9004 0.299
sml0001 Reverse -254 -273 -5.11376 0.288
sll0336 Forward -30 -11 -3.93378 0.253
sll0329 Reverse -334 -353 -5.80207 0.299
sll0754 Forward -244 -225 5.89931 0.11
ssl0788 Forward -28 -9 3.14605 0.179
slr0050 Reverse -104 -123 3.6377 0.159
sll0055 Forward -23 -4 -5.70374 0.299
slr0067 Reverse -198 -217 -5.70374 0.299
sll0462 Forward -33 -14 1.57275 0.222
slr0482 Forward -57 -38 -3.04881 0.243
sll0383 Reverse -319 -338 -5.01543 0.283
ssl0353 Reverse -165 -184 2.45773 0.193
sll0891 Forward -181 -162 34.4153 0.0000125
sll0554 Forward -214 -195 -5.70374 0.299
slr0845 Forward -366 -347 -3.54046 0.243
sll0588 Reverse -167 -186 12.3892 0.11
sll0584 Reverse -235 -254 4.22769 0.133
slr0103 Reverse -134 -153 -4.6221 0.266
sll0289 Forward -172 -153 -5.60541 0.299
slr0929 Reverse -98 -117 -5.21209 0.295
sll0519 Forward -333 -314 -3.3438 0.243
sll1329 Reverse -74 -93 -5.40875 0.297
slr0652 Reverse -23 -42 1.27776 0.226
sll0624 Forward -332 -313 -5.60541 0.299
slr0662 Reverse -83 -102 -5.60541 0.299
sll1498 Forward -329 -310 -6.09707 0.299
slr0756 Reverse -350 -369 -4.52377 0.266
sll0449 Forward -80 -61 -5.31042 0.295
ssl0832 Reverse -364 -383 5.70265 0.11
slr0454 Forward -291 -272 5.70265 0.11
slr0587 Forward -278 -259 -3.63879 0.243
slr0610 Reverse -37 -56 4.22769 0.133
ssl5008 Forward -145 -126 -4.6221 0.266
ssr5009 Reverse -39 -58 -4.6221 0.266
sll5032 Reverse -85 -104 -5.9004 0.299
sll5048 Reverse -273 -292 -6.1954 0.299
sll5059 Reverse -213 -232 -3.44213 0.243
ssl5113 Reverse -82 -101 -3.93378 0.253
ssl7022 Forward -238 -219 -4.52377 0.266
slr7023 Reverse -32 -51 -4.52377 0.266
6803t05 Reverse -323 -342 5.01433 0.126
ORF Direction Start Stop Score q-value

TOMTOM

TOMTOM is an application for comparing motifs to known motifs in existing databases. Here's the possibility of running TOMTOM on this motif against the Prodoric or RegTransBase database. It can take up to 1 minute before the results show up, depending on server load. If you want to run TOMTOM against other databases, or with more custom settings, please visit the TOMTOM website.

Options

PSPM

0.000  0.000  1.000  0.000  
0.000 1.000 0.000 0.000
0.111 0.556 0.222 0.111
1.000 0.000 0.000 0.000
0.000 0.000 1.000 0.000
0.000 0.556 0.000 0.444
0.000 0.000 1.000 0.000
1.000 0.000 0.000 0.000
0.000 0.000 0.000 1.000
0.333 0.333 0.000 0.333
0.000 0.444 0.556 0.000
0.000 1.000 0.000 0.000
0.000 1.000 0.000 0.000
0.000 0.000 1.000 0.000
0.000 0.333 0.000 0.667
0.000 0.000 0.000 1.000
0.000 0.000 0.000 1.000
0.333 0.000 0.111 0.556
0.000 1.000 0.000 0.000
0.000 1.000 0.000 0.000