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Details for NP_442364.1_2

Name NP_442364.1_2
Length 20
Regular expression [TC]TTT[TA][AT][GCT]C[CT][CGA]T[TC]G[CT][CG][AC][GA]T[TG][TA]
Central Yes

Motif logo

Genes containing this motif

18 unique genes found. Note that a gene can occur multiple times in the table below since a motif can be assigned to more than one position in its promoter.

Table filtering
ORF Direction Start Stop Score q-value
slr1300 Reverse -21 -40 22.2223 0.0202
slr0689 Forward -233 -214 12.0942 0.235
slr0891 Forward -263 -244 8.55425 0.282
sll1757 Reverse -129 -148 14.5524 0.219
sll2006 Reverse -41 -60 8.35759 0.286
sll1949 Forward -138 -119 9.83255 0.279
slr2067 Reverse -209 -228 9.83255 0.279
sll1590 Reverse -272 -291 8.75091 0.279
slr1728 Forward -67 -48 8.75091 0.279
ssl0438 Reverse -128 -147 13.3725 0.235
sll1224 Forward -87 -68 8.84924 0.279
sll1218 Reverse -311 -330 8.84924 0.279
sll1446 Forward -122 -103 8.75091 0.279
slr0960 Forward -283 -264 16.5191 0.14
slr0324 Reverse -337 -356 10.5209 0.279
slr0064 Forward -166 -147 9.73422 0.279
slr0210 Forward -169 -150 24.4839 0.019
slr0751 Reverse -218 -237 12.4875 0.235
ORF Direction Start Stop Score q-value

TOMTOM

TOMTOM is an application for comparing motifs to known motifs in existing databases. Here's the possibility of running TOMTOM on this motif against the Prodoric or RegTransBase database. It can take up to 1 minute before the results show up, depending on server load. If you want to run TOMTOM against other databases, or with more custom settings, please visit the TOMTOM website.

Options

PSPM

0.000  0.400  0.000  0.600  
0.000 0.000 0.000 1.000
0.000 0.000 0.000 1.000
0.000 0.000 0.000 1.000
0.200 0.000 0.000 0.800
0.600 0.000 0.000 0.400
0.000 0.200 0.600 0.200
0.000 1.000 0.000 0.000
0.000 0.800 0.000 0.200
0.200 0.400 0.400 0.000
0.000 0.000 0.000 1.000
0.000 0.200 0.000 0.800
0.000 0.000 1.000 0.000
0.000 0.800 0.000 0.200
0.000 0.600 0.400 0.000
0.800 0.200 0.000 0.000
0.400 0.000 0.600 0.000
0.000 0.000 0.000 1.000
0.000 0.000 0.200 0.800
0.200 0.000 0.000 0.800