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Details for NP_442346.1_1

Name NP_442346.1_1
Length 20
Regular expression GG[CA]A[TG][CAT][GC]GCG[CT][AT]GG[GT][CG]TGGG
Central No

Motif logo

Genes containing this motif

69 unique genes found. Note that a gene can occur multiple times in the table below since a motif can be assigned to more than one position in its promoter.

Table filtering
ORF Direction Start Stop Score q-value
slr0612 Forward -357 -338 14.1591 0.27
slr1317 Forward -348 -329 16.9124 0.181
sll1059 Reverse -380 -399 9.83255 0.281
sll1051 Forward -78 -59 12.7825 0.27
slr0744 Reverse -251 -270 10.9142 0.27
sll0216 Reverse -65 -84 11.4058 0.27
sll1325 Forward -153 -134 10.9142 0.27
slr1416 Reverse -169 -188 15.8307 0.247
sll1200 Reverse -254 -273 9.63589 0.287
sll1020 Reverse -205 -224 12.1925 0.27
slr0670 Forward -152 -133 11.6025 0.27
sll0639 Reverse -334 -353 11.2092 0.27
slr1603 Reverse -206 -225 17.2074 0.181
ssr1736 Forward -339 -320 9.93088 0.275
slr2049 Reverse -119 -138 18.6823 0.181
sll1933 Reverse -154 -173 14.1591 0.27
slr1911 Forward -59 -40 13.6675 0.27
slr1039 Forward -61 -42 9.93088 0.275
sll1926 Reverse -121 -140 10.0292 0.275
slr2013 Forward -246 -227 10.4225 0.27
slr1146 Reverse -381 -400 15.0441 0.27
sll1805 Reverse -79 -98 11.5042 0.27
slr1205 Reverse -54 -73 10.2259 0.27
slr1541 Reverse -324 -343 12.1925 0.27
slr1751 Reverse -170 -189 17.404 0.181
slr0880 Forward -238 -219 11.5042 0.27
sll1757 Forward -343 -324 11.6025 0.27
sll2015 Forward -154 -135 11.7992 0.27
sll1905 Reverse -95 -114 10.1275 0.27
sll1599 Reverse -231 -250 10.3242 0.27
slr1518 Forward -90 -71 10.7175 0.27
sll1221 Forward -175 -156 11.1109 0.27
sll1101 Forward -177 -158 10.7175 0.27
ssr2799 Reverse -312 -331 10.5209 0.27
slr1689 Forward -62 -43 11.1109 0.27
slr0938 Reverse -89 -108 11.1109 0.27
sll0421 Forward -183 -164 14.1591 0.27
sll0269 Forward -219 -200 11.7992 0.27
sll0361 Reverse -193 -212 11.5042 0.27
sll1854 Reverse -65 -84 17.404 0.181
slr1945 Reverse -120 -139 10.8159 0.27
sll0300 Reverse -65 -84 10.2259 0.27
slr0366 Reverse -255 -274 13.3725 0.27
sll0328 Forward -278 -259 11.3075 0.27
slr0782 Forward -166 -147 10.2259 0.27
sll0063 Forward -370 -351 21.0423 0.0856
slr0058 Reverse -174 -193 21.0423 0.0856
slr0069 Forward -351 -332 10.7175 0.27
sll0368 Forward -23 -4 12.9791 0.27
slr0426 Reverse -314 -333 12.9791 0.27
slr0839 Reverse -261 -280 10.8159 0.27
slr0514 Forward -334 -315 12.1925 0.27
slr0103 Reverse -195 -214 13.3725 0.27
sll0288 Reverse -81 -100 10.1275 0.27
slr0298 Forward -131 -112 10.1275 0.27
ssl1255 Forward -288 -269 11.6025 0.27
slr0925 Forward -177 -158 13.5691 0.27
slr1455 Forward -260 -241 10.9142 0.27
slr1657 Reverse -160 -179 10.2259 0.27
slr1664 Reverse -266 -285 9.63589 0.287
sll0430 Forward -233 -214 10.8159 0.27
slr1176 Reverse -98 -117 10.8159 0.27
slr0592 Reverse -304 -323 11.0125 0.27
slr0593 Reverse -154 -173 10.4225 0.27
slr5073 Forward -348 -329 9.73422 0.286
sll8035 Forward -375 -356 12.9791 0.27
slr6096 Forward -393 -374 10.5209 0.27
6803t05 Forward -158 -139 11.2092 0.27
6803t12 Forward -306 -287 11.2092 0.27
ORF Direction Start Stop Score q-value

TOMTOM

TOMTOM is an application for comparing motifs to known motifs in existing databases. Here's the possibility of running TOMTOM on this motif against the Prodoric or RegTransBase database. It can take up to 1 minute before the results show up, depending on server load. If you want to run TOMTOM against other databases, or with more custom settings, please visit the TOMTOM website.

Options

PSPM

0.000  0.000  0.833  0.167  
0.000 0.083 0.917 0.000
0.333 0.583 0.083 0.000
1.000 0.000 0.000 0.000
0.000 0.000 0.417 0.583
0.333 0.417 0.000 0.250
0.000 0.250 0.583 0.167
0.000 0.083 0.917 0.000
0.167 0.583 0.167 0.083
0.000 0.000 1.000 0.000
0.000 0.750 0.000 0.250
0.500 0.167 0.000 0.333
0.000 0.000 1.000 0.000
0.000 0.167 0.833 0.000
0.083 0.167 0.417 0.333
0.167 0.417 0.417 0.000
0.000 0.000 0.167 0.833
0.000 0.167 0.750 0.083
0.000 0.083 0.917 0.000
0.000 0.083 0.750 0.167