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Details for NP_442270.1_6

Name NP_442270.1_6
Length 19
Regular expression C[GA]GCG[AG][TCG]A[AG][CTA][GC][GA]A[GA][TC]T[GTC]GT
Central Yes

Motif logo

Genes containing this motif

41 unique genes found. Note that a gene can occur multiple times in the table below since a motif can be assigned to more than one position in its promoter.

Table filtering
ORF Direction Start Stop Score q-value
sll1063 Forward -111 -93 16.7354 0.279
slr1119 Reverse -114 -132 16.7354 0.279
ssr1155 Forward -114 -96 21.2586 0.0299
slr0689 Forward -331 -313 21.2586 0.0299
slr1603 Reverse -137 -155 15.0638 0.283
sll1911 Reverse -382 -400 17.6204 0.279
sll1069 Forward -316 -298 15.3588 0.279
slr1205 Forward -244 -226 15.2604 0.279
slr2071 Forward -342 -324 17.2271 0.279
ssl3335 Reverse -357 -375 15.5554 0.279
slr1827 Forward -129 -111 21.652 0.0299
slr1878 Forward -90 -72 15.7521 0.279
slr1742 Reverse -307 -325 16.4404 0.279
slr1999 Reverse -205 -223 14.7688 0.291
slr1720 Forward -272 -254 15.3588 0.279
sll1600 Forward -366 -348 14.5721 0.293
sll1262 Forward -349 -331 15.8504 0.279
sll1898 Forward -277 -259 17.0304 0.279
slr1288 Forward -374 -356 17.1287 0.279
slr0941 Reverse -150 -168 17.7187 0.279
sll0272 Forward -209 -191 14.9655 0.283
sll0945 Reverse -323 -341 15.1621 0.279
sll0157 Forward -20 -2 15.1621 0.279
slr0342 Reverse -290 -308 16.0471 0.279
slr0069 Forward -328 -310 16.2438 0.279
sll0681 Forward -224 -206 15.3588 0.279
slr0640 Forward -249 -231 17.5221 0.279
slr0420 Reverse -368 -386 16.2438 0.279
sll0094 Reverse -189 -207 16.2438 0.279
sll0040 Reverse -6 -24 14.5721 0.293
sll0498 Reverse -44 -62 16.3421 0.279
sll7034 Forward -107 -89 15.9488 0.279
ssr7035 Reverse -346 -364 15.9488 0.279
ssl7039 Reverse -203 -221 15.1621 0.279
slr7041 Forward -157 -139 15.1621 0.279
ssr6032 Forward -183 -165 14.8671 0.283
slr6033 Forward -202 -184 14.8671 0.283
slr6091 Forward -202 -184 14.8671 0.283
6803t09 Reverse -173 -191 15.5554 0.279
6803t29 Forward -104 -86 14.5721 0.293
6803t40 Forward -104 -86 14.5721 0.293
ORF Direction Start Stop Score q-value

TOMTOM

TOMTOM is an application for comparing motifs to known motifs in existing databases. Here's the possibility of running TOMTOM on this motif against the Prodoric or RegTransBase database. It can take up to 1 minute before the results show up, depending on server load. If you want to run TOMTOM against other databases, or with more custom settings, please visit the TOMTOM website.

Options

PSPM

0.105  0.737  0.000  0.158  
0.421 0.105 0.474 0.000
0.158 0.000 0.842 0.000
0.158 0.842 0.000 0.000
0.158 0.000 0.684 0.158
0.789 0.000 0.211 0.000
0.158 0.263 0.211 0.368
0.737 0.053 0.105 0.105
0.632 0.000 0.368 0.000
0.211 0.421 0.000 0.368
0.158 0.316 0.526 0.000
0.211 0.000 0.789 0.000
0.789 0.105 0.000 0.105
0.368 0.000 0.579 0.053
0.000 0.263 0.053 0.684
0.000 0.000 0.105 0.895
0.000 0.211 0.526 0.263
0.000 0.000 1.000 0.000
0.105 0.105 0.105 0.684