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Details for NP_442252.1_3

Name NP_442252.1_3
Length 19
Regular expression T[TC][AG]AA[CAG]C[CG]G[CG][GCT]AT[CT]G[CG][TCG][GC]G
Central No

Motif logo

Genes containing this motif

92 unique genes found. Note that a gene can occur multiple times in the table below since a motif can be assigned to more than one position in its promoter.

Table filtering
ORF Direction Start Stop Score q-value
sll1394 Forward -264 -246 7.68896 0.291
sll1064 Reverse -155 -173 9.45892 0.244
ssl2069 Reverse -330 -348 8.7706 0.248
slr0724 Reverse -83 -101 14.6705 0.0882
slr0729 Forward -216 -198 9.16393 0.244
slr0240 Reverse -165 -183 15.4571 0.0849
sll1319 Forward -399 -381 9.75391 0.235
slr1772 Forward -245 -227 15.1621 0.0849
slr1777 Forward -247 -229 8.7706 0.248
sll1666 Forward -201 -183 8.47561 0.254
slr1290 Forward -157 -139 9.16393 0.244
slr0976 Reverse -208 -226 10.5406 0.221
slr1045 Forward -340 -322 7.88563 0.287
slr1053 Reverse -271 -289 14.4738 0.0882
ssl1918 Forward -274 -256 11.6222 0.169
slr1755 Forward -396 -378 17.3254 0.0602
sll1642 Reverse -376 -394 9.95058 0.224
sll1638 Forward -395 -377 8.57394 0.249
sll1635 Forward -201 -183 10.2456 0.222
sml0005 Forward -88 -70 13.4905 0.109
sml0005 Forward -372 -354 11.3272 0.18
sml0005 Reverse -97 -115 10.2456 0.222
sll1937 Forward -138 -120 9.16393 0.244
sll0995 Reverse -370 -388 9.26226 0.244
slr1146 Reverse -319 -337 13.5888 0.108
sll1069 Reverse -101 -119 9.65558 0.238
sll1802 Forward -222 -204 11.5239 0.171
slr1200 Reverse -42 -60 21.7503 0.0404
slr1546 Forward -154 -136 9.0656 0.244
slr1862 Reverse -262 -280 15.5554 0.0849
sll1780 Forward -117 -99 9.45892 0.244
sll1764 Forward -356 -338 10.3439 0.222
slr1885 Forward -85 -67 15.2604 0.0849
sll2003 Reverse -138 -156 9.95058 0.224
slr2143 Forward -193 -175 9.95058 0.224
slr2144 Reverse -344 -362 17.4237 0.0602
slr1803 Forward -142 -124 18.997 0.0602
slr1732 Reverse -295 -313 9.95058 0.224
sll1961 Reverse -170 -188 8.67227 0.248
slr2004 Forward -61 -43 7.68896 0.291
sll1595 Reverse -361 -379 17.5221 0.0602
slr1726 Forward -62 -44 17.5221 0.0602
slr2099 Forward -142 -124 19.587 0.0602
slr2105 Forward -359 -341 15.2604 0.0849
ssr2201 Forward -386 -368 8.7706 0.248
slr0808 Forward -141 -123 12.8022 0.134
ssl1498 Forward -239 -221 17.6204 0.0602
sll1262 Forward -355 -337 9.95058 0.224
sll1876 Forward -376 -358 17.3254 0.0602
sll1873 Forward -121 -103 8.37728 0.259
ssl3044 Forward -111 -93 7.68896 0.291
slr1687 Reverse -34 -52 7.68896 0.291
slr1697 Forward -322 -304 11.1305 0.185
slr1004 Reverse -170 -188 8.67227 0.248
slr0935 Forward -114 -96 8.67227 0.248
sll0269 Forward -227 -209 14.1788 0.0921
sll0263 Forward -105 -87 14.4738 0.0882
slr0404 Reverse -364 -382 7.4923 0.299
slr0324 Reverse -228 -246 9.0656 0.244
slr0325 Forward -358 -340 8.57394 0.249
sll0020 Forward -236 -218 11.6222 0.169
sll0410 Forward -164 -146 18.5054 0.0602
sll0410 Forward -248 -230 13.3922 0.11
slr0050 Forward -123 -105 9.0656 0.244
slr0476 Forward -267 -249 9.16393 0.244
sll0454 Reverse -373 -391 12.4089 0.143
sll0611 Forward -174 -156 8.18062 0.265
slr0636 Reverse -82 -100 8.18062 0.265
sll0377 Reverse -273 -291 11.1305 0.185
sll0374 Forward -400 -382 12.3105 0.143
slr0211 Forward -75 -57 16.0471 0.0771
slr0845 Reverse -347 -365 18.2104 0.0602
sll0082 Forward -261 -243 12.6055 0.137
sll0095 Forward -178 -160 16.3421 0.0756
sll0286 Forward -161 -143 8.27895 0.263
sll0281 Forward -260 -242 7.4923 0.299
sll0790 Forward -337 -319 8.96727 0.244
sll1367 Forward -277 -259 14.3755 0.0882
sll0623 Forward -135 -117 14.6705 0.0882
sll1498 Reverse -310 -328 10.2456 0.222
slr1565 Forward -181 -163 10.2456 0.222
sll0727 Forward -286 -268 14.3755 0.0882
slr1660 Reverse -207 -225 16.4404 0.0756
slr1189 Forward -166 -148 13.8838 0.0999
slr0587 Reverse -259 -277 22.9303 0.0311
ssr5011 Reverse -3 -21 16.2438 0.0756
sll5028 Reverse -192 -210 12.2122 0.143
slr5029 Forward -217 -199 12.2122 0.143
sll5049 Forward -208 -190 12.6055 0.137
sll5059 Forward -232 -214 24.1102 0.0285
sll7044 Forward -379 -361 9.16393 0.244
sll7064 Forward -256 -238 17.7187 0.0602
sll7070 Forward -297 -279 14.7688 0.0882
sll8034 Forward -175 -157 7.4923 0.299
slr6041 Forward -337 -319 8.96727 0.244
ORF Direction Start Stop Score q-value

TOMTOM

TOMTOM is an application for comparing motifs to known motifs in existing databases. Here's the possibility of running TOMTOM on this motif against the Prodoric or RegTransBase database. It can take up to 1 minute before the results show up, depending on server load. If you want to run TOMTOM against other databases, or with more custom settings, please visit the TOMTOM website.

Options

PSPM

0.071  0.000  0.000  0.929  
0.000 0.357 0.000 0.643
0.643 0.000 0.357 0.000
1.000 0.000 0.000 0.000
1.000 0.000 0.000 0.000
0.286 0.429 0.214 0.071
0.000 1.000 0.000 0.000
0.143 0.429 0.286 0.143
0.000 0.000 1.000 0.000
0.000 0.643 0.357 0.000
0.000 0.214 0.571 0.214
0.929 0.071 0.000 0.000
0.000 0.000 0.000 1.000
0.000 0.786 0.000 0.214
0.071 0.000 0.857 0.071
0.071 0.571 0.357 0.000
0.143 0.286 0.214 0.357
0.000 0.214 0.786 0.000
0.000 0.071 0.929 0.000