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Details for NP_442214.1_1

Name NP_442214.1_1
Length 20
Regular expression CC[AT]G[CA][AC]GGAT[TC]T[GT][AG][AG][CAT]TTGG
Central No

Motif logo

Genes containing this motif

91 unique genes found. Note that a gene can occur multiple times in the table below since a motif can be assigned to more than one position in its promoter.

Table filtering
ORF Direction Start Stop Score q-value
sll1202 Forward -184 -165 7.96426 0.298
sll1401 Forward -221 -202 13.1758 0.209
slr0241 Reverse -152 -171 6.98095 0.298
sll1326 Reverse -231 -250 6.78429 0.298
slr1415 Forward -190 -171 7.17762 0.298
slr1103 Forward -259 -240 9.43923 0.276
slr1784 Forward -238 -219 8.25926 0.298
sll1669 Forward -240 -221 9.0459 0.276
ssr3000 Forward -148 -129 9.53756 0.276
slr0977 Forward -75 -56 14.4541 0.187
slr1075 Forward -395 -376 9.93088 0.276
sll1507 Forward -112 -93 7.07928 0.298
slr1044 Reverse -320 -339 7.66927 0.298
sll1001 Forward -239 -220 9.24257 0.276
slr1753 Reverse -309 -328 9.24257 0.276
sll1946 Forward -164 -145 12.1925 0.226
slr2053 Forward -273 -254 11.4058 0.226
sll1296 Reverse -95 -114 12.8808 0.218
slr1394 Reverse -145 -164 9.3409 0.276
sll1575 Reverse -149 -168 10.8159 0.25
sll1927 Reverse -167 -186 6.78429 0.298
slr1206 Forward -321 -302 7.37428 0.298
slr1207 Forward -194 -175 11.7008 0.226
sll1738 Forward -226 -207 9.14423 0.276
sll1713 Forward -34 -15 9.63589 0.276
ssl3177 Forward -279 -260 10.8159 0.25
slr1227 Reverse -233 -252 6.88262 0.298
ssr2060 Reverse -67 -86 13.2741 0.209
sll1784 Forward -245 -226 9.43923 0.276
slr1808 Forward -377 -358 8.06259 0.298
slr1811 Forward -343 -324 8.45592 0.298
sll1629 Forward -95 -76 11.6025 0.226
slr0854 Reverse -237 -256 7.66927 0.298
sll0839 Reverse -10 -29 7.57094 0.298
sll1151 Reverse -331 -350 7.07928 0.298
sll1958 Forward -289 -270 9.43923 0.276
sll1609 Forward -213 -194 9.83255 0.276
sll1598 Forward -161 -142 6.88262 0.298
sll1981 Reverse -88 -107 16.3224 0.164
slr1959 Forward -291 -272 6.88262 0.298
slr1275 Reverse -222 -241 6.78429 0.298
slr1276 Reverse -278 -297 7.37428 0.298
slr1168 Forward -221 -202 16.7157 0.164
ssr2723 Forward -218 -199 13.9625 0.207
slr1925 Forward -246 -227 12.5858 0.218
slr1925 Reverse -59 -78 11.4058 0.226
slr1945 Reverse -115 -134 8.16093 0.298
sll0167 Reverse -191 -210 12.5858 0.218
slr0776 Forward -209 -190 8.25926 0.298
sll0760 Forward -231 -212 8.55425 0.298
sll0749 Reverse -72 -91 11.6025 0.226
slr0783 Forward -117 -98 11.6025 0.226
sll0318 Forward -320 -301 6.88262 0.298
sll0016 Reverse -47 -66 13.2741 0.209
slr0006 Forward -352 -333 13.2741 0.209
slr0015 Forward -270 -251 6.88262 0.298
sll0195 Reverse -116 -135 6.98095 0.298
sll0062 Forward -327 -308 20.354 0.0974
slr0059 Reverse -310 -329 20.354 0.0974
sll0058 Forward -156 -137 7.37428 0.298
slr0474 Reverse -329 -348 7.86593 0.298
slr0476 Forward -309 -290 16.4207 0.164
sll0687 Reverse -304 -323 8.25926 0.298
slr0825 Reverse -149 -168 11.7008 0.226
slr0839 Reverse -250 -269 8.65258 0.298
sll0080 Forward -299 -280 10.9142 0.25
slr0299 Reverse -220 -239 7.47261 0.298
sll0666 Reverse -253 -272 6.88262 0.298
sll0660 Forward -370 -351 7.37428 0.298
sll0745 Forward -108 -89 8.25926 0.298
sll0033 Reverse -283 -302 7.66927 0.298
slr1418 Reverse -296 -315 9.0459 0.276
sll1343 Forward -385 -366 8.55425 0.298
slr1454 Forward -91 -72 10.6192 0.259
slr1560 Reverse -345 -364 9.0459 0.276
slr1576 Forward -70 -51 15.6341 0.164
sll1484 Reverse -189 -208 7.07928 0.298
ssr2781 Reverse -164 -183 8.45592 0.298
slr0596 Reverse -358 -377 15.9291 0.164
ssl5039 Forward -281 -262 6.88262 0.298
sll5081 Reverse -370 -389 7.37428 0.298
slr5082 Forward -120 -101 7.37428 0.298
sll5089 Reverse -143 -162 10.1275 0.271
sll5109 Reverse -38 -57 7.27595 0.298
slr7010 Reverse -232 -251 12.1925 0.226
sll7089 Forward -269 -250 10.3242 0.271
sll8032 Reverse -326 -345 16.4207 0.164
slr6005 Reverse -170 -189 10.1275 0.271
slr6064 Reverse -170 -189 10.1275 0.271
6803t12 Reverse -338 -357 8.16093 0.298
6803t37 Reverse -282 -301 14.7491 0.184
6803t38 Reverse -372 -391 14.7491 0.184
ORF Direction Start Stop Score q-value

TOMTOM

TOMTOM is an application for comparing motifs to known motifs in existing databases. Here's the possibility of running TOMTOM on this motif against the Prodoric or RegTransBase database. It can take up to 1 minute before the results show up, depending on server load. If you want to run TOMTOM against other databases, or with more custom settings, please visit the TOMTOM website.

Options

PSPM

0.125  0.875  0.000  0.000  
0.000 1.000 0.000 0.000
0.500 0.000 0.000 0.500
0.000 0.125 0.875 0.000
0.250 0.750 0.000 0.000
0.500 0.250 0.125 0.125
0.000 0.125 0.875 0.000
0.000 0.125 0.875 0.000
0.750 0.000 0.125 0.125
0.125 0.000 0.125 0.750
0.000 0.250 0.000 0.750
0.000 0.000 0.125 0.875
0.000 0.000 0.750 0.250
0.750 0.000 0.250 0.000
0.500 0.000 0.500 0.000
0.250 0.500 0.000 0.250
0.125 0.125 0.000 0.750
0.125 0.000 0.000 0.875
0.000 0.000 1.000 0.000
0.000 0.000 1.000 0.000