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Details for NP_442196.1_10

Name NP_442196.1_10
Length 20
Regular expression [CA]A[AG]GC[AGC]A[TA][CG]GC[AC][GC]AAGG[GA]GC
Central No

Motif logo

Genes containing this motif

95 unique genes found. Note that a gene can occur multiple times in the table below since a motif can be assigned to more than one position in its promoter.

Table filtering
ORF Direction Start Stop Score q-value
sll0716 Reverse -290 -309 14.3558 0.17
slr1006 Forward -348 -329 9.73422 0.28
ssl1326 Forward -356 -337 10.4225 0.259
sll0216 Reverse -333 -352 10.9142 0.237
sll1325 Forward -281 -262 17.6007 0.133
sll1037 Reverse -96 -115 10.9142 0.237
sll1683 Forward -287 -268 11.5042 0.224
slr1302 Forward -337 -318 11.7008 0.224
slr1610 Forward -53 -34 11.6025 0.224
sll1005 Reverse -229 -248 10.1275 0.268
slr1763 Forward -213 -194 19.0757 0.117
sll1635 Forward -196 -177 15.0441 0.149
sml0005 Forward -82 -63 15.9291 0.149
ssr3122 Forward -313 -294 13.8641 0.181
sll1946 Reverse -368 -387 12.8808 0.21
slr1918 Forward -371 -352 13.1758 0.21
ssl2559 Forward -225 -206 11.5042 0.224
sll1290 Forward -77 -58 15.5357 0.149
ssr2333 Forward -366 -347 10.0292 0.275
sll1917 Forward -325 -306 10.1275 0.268
sll1911 Forward -179 -160 11.0125 0.235
slr1149 Reverse -214 -233 9.93088 0.278
sll1812 Forward -282 -263 10.3242 0.265
sll1804 Forward -158 -139 18.0924 0.131
slr1901 Forward -131 -112 20.4523 0.117
slr1200 Reverse -378 -397 15.8307 0.149
ssr2016 Reverse -348 -367 10.5209 0.256
slr1212 Forward -166 -147 15.2408 0.149
sll1142 Reverse -320 -339 11.7008 0.224
slr1238 Forward -215 -196 14.6508 0.162
slr1240 Reverse -325 -344 14.4541 0.169
slr0876 Forward -295 -276 12.1925 0.224
sll1764 Forward -191 -172 17.0107 0.133
sll1760 Forward -96 -77 18.9773 0.117
slr1880 Reverse -164 -183 18.9773 0.117
sll2015 Forward -157 -138 15.9291 0.149
sll2002 Forward -320 -301 9.53756 0.296
ssl3291 Forward -56 -37 10.7175 0.245
sll1623 Reverse -4 -23 12.7825 0.21
slr1736 Forward -160 -141 12.7825 0.21
sll0839 Forward -86 -67 25.6638 0.00566
slr1515 Forward -300 -281 12.5858 0.217
ssr3571 Forward -146 -127 17.3057 0.133
slr0820 Forward -177 -158 12.4875 0.22
slr1468 Forward -65 -46 11.3075 0.225
sll1435 Forward -23 -4 15.7324 0.149
ssr2806 Forward -103 -84 13.3725 0.201
sll1559 Forward -213 -194 11.2092 0.225
slr1686 Reverse -78 -97 11.2092 0.225
sll0914 Reverse -235 -254 11.6025 0.224
sll0910 Forward -331 -312 11.9958 0.224
sll1522 Reverse -235 -254 16.9124 0.133
sll0269 Forward -222 -203 14.1591 0.172
slr0294 Forward -348 -329 11.4058 0.225
sll1854 Reverse -152 -171 18.4857 0.126
sll0944 Forward -160 -141 9.93088 0.278
slr0359 Reverse -262 -281 11.6025 0.224
sml0001 Forward -203 -184 11.9958 0.224
sll0328 Forward -188 -169 12.5858 0.217
sll0771 Reverse -228 -247 12.2908 0.222
slr0774 Forward -70 -51 12.2908 0.222
sll0749 Reverse -221 -240 11.8975 0.224
sll0192 Forward -146 -127 11.0125 0.235
slr0056 Reverse -67 -86 10.2259 0.268
sml0002 Reverse -333 -352 11.7008 0.224
slr0484 Reverse -146 -165 9.73422 0.28
slr0492 Reverse -23 -42 12.0942 0.224
slr0492 Forward -177 -158 11.8975 0.224
slr0493 Reverse -259 -278 13.3725 0.201
sll0679 Forward -388 -369 9.83255 0.28
slr0418 Forward -80 -61 12.7825 0.21
sll0373 Forward -150 -131 10.6192 0.251
slr0900 Reverse -233 -252 15.0441 0.149
slr0906 Reverse -272 -291 15.2408 0.149
slr0072 Reverse -35 -54 15.2408 0.149
slr0072 Forward -48 -29 10.2259 0.268
sll0470 Reverse -201 -220 13.4708 0.201
sll0593 Reverse -258 -277 10.1275 0.268
slr0625 Forward -243 -224 12.7825 0.21
slr0116 Reverse -256 -275 15.3391 0.149
sll0286 Forward -171 -152 11.5042 0.224
sll0790 Reverse -85 -104 10.8159 0.239
sll1367 Forward -251 -232 11.3075 0.225
slr0651 Reverse -292 -311 14.0608 0.173
sll1499 Reverse -255 -274 12.0942 0.224
slr1563 Forward -180 -161 16.1257 0.149
ssr2781 Reverse -123 -142 17.0107 0.133
ssr2781 Reverse -167 -186 10.4225 0.259
slr0456 Forward -265 -246 14.8474 0.156
sll0578 Forward -210 -191 9.83255 0.28
ssr5106 Forward -350 -331 14.1591 0.172
slr7037 Forward -29 -10 11.2092 0.225
ssl7039 Reverse -219 -238 9.73422 0.28
slr7041 Forward -141 -122 9.73422 0.28
sll7078 Forward -312 -293 11.3075 0.225
sll8048 Forward -117 -98 12.3892 0.222
ssl6035 Forward -350 -331 12.8808 0.21
slr6041 Reverse -85 -104 10.8159 0.239
ORF Direction Start Stop Score q-value

TOMTOM

TOMTOM is an application for comparing motifs to known motifs in existing databases. Here's the possibility of running TOMTOM on this motif against the Prodoric or RegTransBase database. It can take up to 1 minute before the results show up, depending on server load. If you want to run TOMTOM against other databases, or with more custom settings, please visit the TOMTOM website.

Options

PSPM

0.250  0.583  0.167  0.000  
0.833 0.000 0.167 0.000
0.500 0.000 0.333 0.167
0.000 0.083 0.917 0.000
0.000 0.917 0.000 0.083
0.417 0.250 0.333 0.000
0.833 0.083 0.000 0.083
0.333 0.000 0.000 0.667
0.167 0.333 0.333 0.167
0.083 0.000 0.917 0.000
0.167 0.750 0.083 0.000
0.500 0.250 0.083 0.167
0.000 0.250 0.667 0.083
0.833 0.167 0.000 0.000
0.750 0.083 0.000 0.167
0.000 0.000 1.000 0.000
0.000 0.000 1.000 0.000
0.250 0.167 0.583 0.000
0.000 0.000 0.917 0.083
0.000 0.917 0.083 0.000