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Details for NP_442147.1_4

Name NP_442147.1_4
Length 20
Regular expression [CG][AT]G[TA][GC]AT[TG]GG[CT][CGT][AC][CT][CA][CT][AT][CA][CT][CG]
Central No

Motif logo

Genes containing this motif

12 unique genes found. Note that a gene can occur multiple times in the table below since a motif can be assigned to more than one position in its promoter.

Table filtering
ORF Direction Start Stop Score q-value
ssr1604 Forward -79 -60 17.404 0.222
slr1763 Reverse -179 -198 19.8623 0.13
slr1896 Reverse -54 -73 16.8141 0.27
sll1716 Forward -128 -109 17.404 0.222
sll1305 Reverse -145 -164 18.0924 0.186
sll1624 Forward -335 -316 19.0757 0.13
sll1436 Forward -362 -343 20.1573 0.13
slr0285 Forward -370 -351 18.9773 0.13
ssl0769 Reverse -288 -307 18.879 0.13
ssr1038 Forward -352 -333 16.7157 0.27
slr0926 Forward -43 -24 20.944 0.13
6803t06 Forward -279 -260 18.9773 0.13
ORF Direction Start Stop Score q-value

TOMTOM

TOMTOM is an application for comparing motifs to known motifs in existing databases. Here's the possibility of running TOMTOM on this motif against the Prodoric or RegTransBase database. It can take up to 1 minute before the results show up, depending on server load. If you want to run TOMTOM against other databases, or with more custom settings, please visit the TOMTOM website.

Options

PSPM

0.000  0.714  0.214  0.071  
0.500 0.000 0.071 0.429
0.000 0.071 0.786 0.143
0.214 0.143 0.000 0.643
0.000 0.286 0.714 0.000
1.000 0.000 0.000 0.000
0.143 0.071 0.071 0.714
0.000 0.143 0.214 0.643
0.000 0.000 1.000 0.000
0.000 0.143 0.857 0.000
0.000 0.786 0.000 0.214
0.000 0.500 0.286 0.214
0.500 0.429 0.071 0.000
0.000 0.786 0.000 0.214
0.214 0.786 0.000 0.000
0.143 0.357 0.143 0.357
0.500 0.071 0.000 0.429
0.286 0.643 0.000 0.071
0.000 0.500 0.143 0.357
0.000 0.643 0.357 0.000