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Details for NP_442112.1_8

Name NP_442112.1_8
Length 20
Regular expression [AGC]GT[AG][CG]GG[AC][TC][ATC][AT]CC[CGT]C[AC][CT][CT][GA][CAG]
Central No

Motif logo

Genes containing this motif

7 unique genes found. Note that a gene can occur multiple times in the table below since a motif can be assigned to more than one position in its promoter.

Table filtering
ORF Direction Start Stop Score q-value
sll0912 Forward -365 -346 16.9124 0.242
slr0719 Reverse -372 -391 17.994 0.231
slr0906 Forward -255 -236 17.6007 0.231
sll0586 Reverse -81 -100 17.2074 0.231
slr0623 Forward -283 -264 17.2074 0.231
sll0792 Reverse -340 -359 19.3707 0.103
sll0027 Reverse -244 -263 17.109 0.231
ORF Direction Start Stop Score q-value

TOMTOM

TOMTOM is an application for comparing motifs to known motifs in existing databases. Here's the possibility of running TOMTOM on this motif against the Prodoric or RegTransBase database. It can take up to 1 minute before the results show up, depending on server load. If you want to run TOMTOM against other databases, or with more custom settings, please visit the TOMTOM website.

Options

PSPM

0.400  0.250  0.350  0.000  
0.067 0.183 0.567 0.183
0.150 0.133 0.083 0.633
0.667 0.050 0.217 0.067
0.167 0.450 0.317 0.067
0.000 0.117 0.800 0.083
0.000 0.000 1.000 0.000
0.517 0.250 0.067 0.167
0.117 0.267 0.100 0.517
0.383 0.267 0.000 0.350
0.450 0.133 0.167 0.250
0.000 0.750 0.133 0.117
0.100 0.767 0.133 0.000
0.100 0.367 0.317 0.217
0.150 0.700 0.000 0.150
0.533 0.350 0.100 0.017
0.000 0.650 0.133 0.217
0.017 0.517 0.000 0.467
0.217 0.083 0.600 0.100
0.317 0.333 0.317 0.033