NP_442112.1_8 | Synergy

Details for NP_442112.1_8

Name	NP_442112.1_8
Length	20
Regular expression	[AGC]GT[AG][CG]GG[AC][TC][ATC][AT]CC[CGT]C[AC][CT][CT][GA][CAG]
Central	No

Motif logo

Genes containing this motif

7 unique genes found. Note that a gene can occur multiple times in the table below since a motif can be assigned to more than one position in its promoter.

ORF	Direction	Start	Stop	Score	q-value
sll0912	Forward	-365	-346	16.9124	0.242
slr0719	Reverse	-372	-391	17.994	0.231
slr0906	Forward	-255	-236	17.6007	0.231
sll0586	Reverse	-81	-100	17.2074	0.231
slr0623	Forward	-283	-264	17.2074	0.231
sll0792	Reverse	-340	-359	19.3707	0.103
sll0027	Reverse	-244	-263	17.109	0.231
ORF	Direction	Start	Stop	Score	q-value

TOMTOM

TOMTOM is an application for comparing motifs to known motifs in existing databases. Here's the possibility of running TOMTOM on this motif against the Prodoric or RegTransBase database. It can take up to 1 minute before the results show up, depending on server load. If you want to run TOMTOM against other databases, or with more custom settings, please visit the TOMTOM website.

PSPM

0.400  0.250  0.350  0.000  
0.067  0.183  0.567  0.183  
0.150  0.133  0.083  0.633  
0.667  0.050  0.217  0.067  
0.167  0.450  0.317  0.067  
0.000  0.117  0.800  0.083  
0.000  0.000  1.000  0.000  
0.517  0.250  0.067  0.167  
0.117  0.267  0.100  0.517  
0.383  0.267  0.000  0.350  
0.450  0.133  0.167  0.250  
0.000  0.750  0.133  0.117  
0.100  0.767  0.133  0.000  
0.100  0.367  0.317  0.217  
0.150  0.700  0.000  0.150  
0.533  0.350  0.100  0.017  
0.000  0.650  0.133  0.217  
0.017  0.517  0.000  0.467  
0.217  0.083  0.600  0.100  
0.317  0.333  0.317  0.033