Details for NP_442112.1_8
Name | NP_442112.1_8 |
---|---|
Length | 20 |
Regular expression | [AGC]GT[AG][CG]GG[AC][TC][ATC][AT]CC[CGT]C[AC][CT][CT][GA][CAG] |
Central | No |
Motif logo
Genes containing this motif
7 unique genes found. Note that a gene can occur multiple times in the table below since a motif can be assigned to more than one position in its promoter.
ORF | Direction | Start | Stop | Score | q-value |
---|---|---|---|---|---|
sll0912 | Forward | -365 | -346 | 16.9124 | 0.242 |
slr0719 | Reverse | -372 | -391 | 17.994 | 0.231 |
slr0906 | Forward | -255 | -236 | 17.6007 | 0.231 |
sll0586 | Reverse | -81 | -100 | 17.2074 | 0.231 |
slr0623 | Forward | -283 | -264 | 17.2074 | 0.231 |
sll0792 | Reverse | -340 | -359 | 19.3707 | 0.103 |
sll0027 | Reverse | -244 | -263 | 17.109 | 0.231 |
ORF | Direction | Start | Stop | Score | q-value |
TOMTOM
TOMTOM is an application for comparing motifs to known motifs in existing databases. Here's the possibility of running TOMTOM on this motif against the Prodoric or RegTransBase database. It can take up to 1 minute before the results show up, depending on server load. If you want to run TOMTOM against other databases, or with more custom settings, please visit the TOMTOM website.
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PSPM
0.400 0.250 0.350 0.000
0.067 0.183 0.567 0.183
0.150 0.133 0.083 0.633
0.667 0.050 0.217 0.067
0.167 0.450 0.317 0.067
0.000 0.117 0.800 0.083
0.000 0.000 1.000 0.000
0.517 0.250 0.067 0.167
0.117 0.267 0.100 0.517
0.383 0.267 0.000 0.350
0.450 0.133 0.167 0.250
0.000 0.750 0.133 0.117
0.100 0.767 0.133 0.000
0.100 0.367 0.317 0.217
0.150 0.700 0.000 0.150
0.533 0.350 0.100 0.017
0.000 0.650 0.133 0.217
0.017 0.517 0.000 0.467
0.217 0.083 0.600 0.100
0.317 0.333 0.317 0.033