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Details for NP_442068.1_4

Name NP_442068.1_4
Length 20
Regular expression C[AC]CC[TA][GT][GA][TC]C[CG]CC[AC][TG][CT][AC]AC[ACG]A
Central No

Motif logo

Genes containing this motif

184 unique genes found. Note that a gene can occur multiple times in the table below since a motif can be assigned to more than one position in its promoter.

Table filtering
ORF Direction Start Stop Score q-value
slr1484 Forward -364 -345 7.27514 0.23
sll1057 Reverse -280 -299 3.9319 0.299
slr1125 Forward -255 -236 7.76679 0.23
sll1043 Reverse -296 -315 9.24175 0.192
sll1321 Reverse -131 -150 7.37347 0.23
slr1413 Forward -68 -49 7.37347 0.23
sll1039 Forward -340 -321 7.37347 0.23
slr1102 Reverse -163 -182 11.2084 0.16
sll1032 Forward -181 -162 6.78348 0.23
sll1031 Reverse -204 -223 14.2566 0.137
sll1676 Reverse -374 -393 10.52 0.171
slr1787 Forward -226 -207 10.52 0.171
ssr2142 Forward -188 -169 4.22689 0.296
sll0939 Forward -253 -234 6.78348 0.23
sll0939 Reverse -108 -127 5.80018 0.246
slr1610 Forward -68 -49 7.96345 0.23
slr1610 Forward -341 -322 4.03023 0.299
slr1614 Forward -54 -35 6.39016 0.232
slr1079 Forward -125 -106 13.9616 0.137
sll1023 Forward -373 -354 4.81688 0.286
sll1502 Forward -380 -361 12.9783 0.143
ssr2711 Reverse -245 -264 12.9783 0.143
slr1764 Forward -251 -232 11.995 0.143
ssr2962 Reverse -293 -312 7.07848 0.23
slr2032 Forward -333 -314 5.99684 0.243
slr2047 Reverse -52 -71 7.37347 0.23
sll1834 Reverse -93 -112 3.83357 0.299
sll0998 Forward -115 -96 4.71854 0.292
slr1035 Reverse -135 -154 12.0933 0.143
sll1583 Forward -141 -122 5.2102 0.27
sll1581 Reverse -179 -198 8.4551 0.224
slr1702 Forward -298 -279 8.4551 0.224
sll1927 Reverse -48 -67 7.17681 0.23
ssl3615 Forward -340 -321 7.07848 0.23
sll1910 Forward -314 -295 3.83357 0.299
slr2030 Forward -26 -7 5.2102 0.27
slr2030 Reverse -368 -387 3.83357 0.299
slr1138 Reverse -228 -247 4.42355 0.296
sll1082 Reverse -207 -226 8.06178 0.23
sll1078 Reverse -188 -207 9.93006 0.183
sml0006 Reverse -327 -346 7.27514 0.23
sll1814 Reverse -380 -399 6.88182 0.23
sll1813 Forward -161 -142 4.32522 0.296
slr1898 Forward -395 -376 10.2251 0.179
sll1789 Forward -260 -241 6.1935 0.237
sll1121 Reverse -252 -271 4.42355 0.296
sll1746 Reverse -337 -356 11.2084 0.16
slr1826 Reverse -351 -370 8.35677 0.224
sll1726 Forward -299 -280 4.52188 0.296
slr1839 Reverse -328 -347 4.22689 0.296
sll1452 Reverse -250 -269 6.09517 0.24
ssl3177 Forward -265 -246 14.3549 0.137
slr1751 Forward -243 -224 12.585 0.143
slr1224 Reverse -181 -200 4.81688 0.286
slr1226 Forward -303 -284 5.80018 0.246
slr1232 Forward -264 -245 6.39016 0.232
sll1131 Forward -369 -350 6.78348 0.23
ssr2060 Forward -238 -219 5.2102 0.27
slr0877 Reverse -74 -93 9.14342 0.192
slr0887 Reverse -9 -28 10.7167 0.171
slr0888 Forward -342 -323 4.12856 0.296
sll0861 Reverse -332 -351 12.1917 0.143
sll1769 Reverse -205 -224 9.14342 0.192
slr1880 Forward -339 -320 9.83173 0.183
sll1758 Reverse -291 -310 7.86512 0.23
slr1881 Forward -211 -192 7.86512 0.23
ssr3188 Forward -366 -347 5.99684 0.243
sll2006 Reverse -215 -234 6.39016 0.232
slr1805 Forward -251 -232 4.52188 0.296
slr1820 Reverse -371 -390 7.17681 0.23
slr1732 Reverse -82 -101 19.1731 0.0814
sll1623 Reverse -341 -360 5.89851 0.245
slr1740 Reverse -239 -258 4.03023 0.299
slr1744 Reverse -219 -238 14.7483 0.137
sll0837 Reverse -188 -207 7.27514 0.23
sll1150 Forward -255 -236 5.89851 0.245
slr2003 Reverse -330 -349 5.60352 0.251
slr1712 Reverse -71 -90 6.78348 0.23
sll1606 Reverse -166 -185 4.62021 0.296
sll1606 Forward -369 -350 4.32522 0.296
slr1720 Reverse -314 -333 11.7983 0.146
slr1729 Reverse -213 -232 3.9319 0.299
ssr2912 Forward -385 -366 5.89851 0.245
slr1730 Forward -108 -89 4.91521 0.283
slr1730 Forward -107 -88 4.03023 0.299
ssl0438 Forward -157 -138 18.9765 0.0814
sll1979 Reverse -121 -140 5.11187 0.275
slr2094 Forward -116 -97 5.11187 0.275
slr1519 Forward -283 -264 15.0432 0.137
slr2121 Forward -92 -73 12.1917 0.143
sll1221 Reverse -140 -159 5.01354 0.279
sll1250 Reverse -348 -367 6.48849 0.232
sll1894 Reverse -217 -236 9.24175 0.192
ssr3341 Reverse -306 -325 13.0766 0.143
slr1974 Reverse -311 -330 6.88182 0.23
sll1381 Forward -80 -61 4.52188 0.296
sll1374 Forward -25 -6 6.29183 0.232
sll1372 Reverse -317 -336 11.2084 0.16
slr1269 Reverse -81 -100 6.48849 0.232
slr1280 Reverse -204 -223 5.40686 0.261
ssr2130 Reverse -298 -317 5.01354 0.279
sll1098 Forward -287 -268 5.60352 0.251
slr1168 Reverse -87 -106 6.58682 0.232
sll1553 Reverse -303 -322 4.22689 0.296
sll0912 Reverse -87 -106 9.53674 0.184
slr0949 Forward -381 -362 9.63507 0.184
slr0949 Forward -199 -180 9.53674 0.184
slr1626 Forward -134 -115 6.58682 0.232
slr1628 Forward -286 -267 7.4718 0.23
sll1527 Forward -104 -85 4.22689 0.296
sll0428 Forward -132 -113 4.32522 0.296
sll0419 Reverse -297 -316 10.6184 0.171
sll0262 Reverse -31 -50 3.9319 0.299
slr0284 Forward -338 -319 4.42355 0.296
slr0293 Forward -298 -279 4.42355 0.296
sll0361 Reverse -283 -302 10.9134 0.164
slr0401 Reverse -129 -148 12.4867 0.143
slr0401 Reverse -159 -178 12.1917 0.143
slr0402 Forward -261 -242 11.995 0.143
slr0149 Reverse -261 -280 11.0117 0.162
sll0146 Reverse -262 -281 8.25844 0.227
sll0144 Forward -275 -256 8.35677 0.224
slr0165 Forward -357 -338 7.96345 0.23
slr1940 Forward -199 -180 3.83357 0.299
sll1845 Reverse -329 -348 4.62021 0.296
sll0177 Forward -293 -274 14.1583 0.137
sll0173 Forward -120 -101 5.60352 0.251
slr0366 Forward -72 -53 9.93006 0.183
slr0370 Reverse -170 -189 10.2251 0.179
sll0772 Reverse -328 -347 7.4718 0.23
sll0754 Reverse -2 -21 5.80018 0.246
sll0312 Forward -334 -315 7.66846 0.23
slr1000 Forward -287 -268 12.3883 0.143
sll0408 Reverse -227 -246 5.60352 0.251
sll0408 Forward -103 -84 4.12856 0.296
sll0057 Forward -313 -294 14.3549 0.137
slr0479 Reverse -81 -100 9.7334 0.184
slr0479 Forward -23 -4 6.78348 0.23
sll0689 Forward -123 -104 3.83357 0.299
sll0687 Reverse -39 -58 6.29183 0.232
sll0603 Reverse -101 -120 8.16011 0.228
slr0650 Forward -67 -48 3.83357 0.299
slr0195 Reverse -380 -399 4.22689 0.296
slr0907 Forward -396 -377 6.09517 0.24
sll0830 Forward -244 -225 5.70185 0.251
slr0083 Forward -370 -351 6.88182 0.23
sll0080 Forward -281 -262 7.37347 0.23
slr0089 Forward -208 -189 6.48849 0.232
slr0498 Reverse -148 -167 14.8466 0.137
slr0498 Reverse -147 -166 13.7649 0.137
slr0510 Forward -77 -58 12.1917 0.143
slr0516 Reverse -210 -229 7.07848 0.23
slr0521 Reverse -185 -204 7.76679 0.23
slr0522 Forward -317 -298 13.175 0.143
slr0615 Forward -248 -229 7.4718 0.23
ssr1041 Reverse -326 -345 4.12856 0.296
sll0587 Reverse -59 -78 7.86512 0.23
sll0586 Reverse -107 -126 11.7 0.146
slr0623 Forward -257 -238 11.7 0.146
slr0109 Forward -246 -227 7.17681 0.23
slr0302 Reverse -92 -111 8.16011 0.228
sll0661 Reverse -89 -108 4.81688 0.286
sll0745 Forward -140 -121 10.1267 0.179
sll0037 Forward -349 -330 4.32522 0.296
slr0036 Reverse -81 -100 11.995 0.143
sll0495 Forward -227 -208 3.9319 0.299
slr1428 Forward -370 -351 4.91521 0.283
ssl2667 Reverse -369 -388 7.4718 0.23
sll0630 Reverse -56 -75 8.84842 0.207
slr0655 Forward -125 -106 17.8948 0.1
sll1495 Reverse -276 -295 6.29183 0.232
sll1488 Reverse -130 -149 6.29183 0.232
slr1570 Forward -233 -214 6.29183 0.232
sll1479 Reverse -100 -119 6.78348 0.23
smr0004 Reverse -166 -185 9.83173 0.183
sll0444 Reverse -262 -281 6.48849 0.232
slr0455 Reverse -198 -217 4.12856 0.296
slr1187 Reverse -264 -283 9.34008 0.192
ssl5064 Forward -171 -152 10.1267 0.179
ssl5113 Reverse -266 -285 4.42355 0.296
slr5115 Forward -228 -209 4.42355 0.296
slr5118 Reverse -73 -92 15.3382 0.137
slr7104 Forward -199 -180 11.11 0.161
sll8004 Reverse -277 -296 20.2548 0.0814
slr6007 Forward -249 -230 13.8633 0.137
slr6007 Forward -207 -188 5.40686 0.261
sll6010 Reverse -231 -250 4.12856 0.296
slr6066 Forward -249 -230 13.8633 0.137
slr6066 Forward -207 -188 5.40686 0.261
sll6069 Reverse -231 -250 4.12856 0.296
slr6094 Reverse -297 -316 16.1249 0.137
6803t07 Reverse -216 -235 9.63507 0.184
6803t09 Forward -240 -221 8.35677 0.224
6803t38 Reverse -56 -75 3.9319 0.299
6803t39 Reverse -307 -326 4.42355 0.296
6803t42 Reverse -48 -67 6.29183 0.232
ORF Direction Start Stop Score q-value

TOMTOM

TOMTOM is an application for comparing motifs to known motifs in existing databases. Here's the possibility of running TOMTOM on this motif against the Prodoric or RegTransBase database. It can take up to 1 minute before the results show up, depending on server load. If you want to run TOMTOM against other databases, or with more custom settings, please visit the TOMTOM website.

Options

PSPM

0.000  0.900  0.100  0.000  
0.700 0.300 0.000 0.000
0.000 1.000 0.000 0.000
0.100 0.800 0.000 0.100
0.300 0.100 0.100 0.500
0.000 0.000 0.500 0.500
0.200 0.000 0.800 0.000
0.000 0.400 0.000 0.600
0.000 1.000 0.000 0.000
0.100 0.400 0.400 0.100
0.000 0.900 0.000 0.100
0.000 1.000 0.000 0.000
0.700 0.200 0.000 0.100
0.100 0.000 0.300 0.600
0.000 0.700 0.100 0.200
0.600 0.400 0.000 0.000
1.000 0.000 0.000 0.000
0.100 0.900 0.000 0.000
0.600 0.200 0.200 0.000
1.000 0.000 0.000 0.000