Your browser is old and dusty. Try Google Chrome!

Details for NP_442067.1_3

Name NP_442067.1_3
Length 20
Regular expression ATG[GC][GA][AG]GA[GCT]TT[TC]TT[CT][GA][TAC][CT]AA
Central No

Motif logo

Genes containing this motif

17 unique genes found. Note that a gene can occur multiple times in the table below since a motif can be assigned to more than one position in its promoter.

Table filtering
ORF Direction Start Stop Score q-value
sll1401 Reverse -359 -378 15.4374 0.224
slr0721 Forward -219 -200 14.2574 0.24
slr1414 Forward -296 -277 14.9458 0.224
sll1118 Reverse -381 -400 13.2741 0.267
slr1198 Forward -137 -118 13.2741 0.267
slr1863 Reverse -316 -335 14.6508 0.224
sll1998 Forward -310 -291 14.6508 0.224
ssl2982 Reverse -337 -356 14.6508 0.224
slr0179 Reverse -277 -296 16.7157 0.224
sll0754 Forward -259 -240 23.2056 0.0436
slr0353 Reverse -338 -357 14.6508 0.224
sll0007 Forward -324 -305 15.4374 0.224
slr0082 Forward -310 -291 16.7157 0.224
slr0699 Reverse -264 -283 13.4708 0.267
sll0662 Reverse -117 -136 17.109 0.224
slr0453 Reverse -114 -133 13.8641 0.259
sll5063 Reverse -80 -99 14.8474 0.224
ORF Direction Start Stop Score q-value

TOMTOM

TOMTOM is an application for comparing motifs to known motifs in existing databases. Here's the possibility of running TOMTOM on this motif against the Prodoric or RegTransBase database. It can take up to 1 minute before the results show up, depending on server load. If you want to run TOMTOM against other databases, or with more custom settings, please visit the TOMTOM website.

Options

PSPM

0.882  0.059  0.059  0.000  
0.000 0.000 0.059 0.941
0.000 0.000 1.000 0.000
0.176 0.353 0.471 0.000
0.235 0.000 0.765 0.000
0.412 0.176 0.294 0.118
0.000 0.000 1.000 0.000
1.000 0.000 0.000 0.000
0.059 0.294 0.412 0.235
0.000 0.000 0.000 1.000
0.118 0.000 0.000 0.882
0.000 0.294 0.000 0.706
0.000 0.000 0.118 0.882
0.000 0.000 0.118 0.882
0.059 0.529 0.118 0.294
0.294 0.176 0.471 0.059
0.294 0.235 0.000 0.471
0.000 0.647 0.118 0.235
0.941 0.000 0.000 0.059
1.000 0.000 0.000 0.000