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Details for NP_442065.1_5

Name NP_442065.1_5
Length 20
Regular expression [GC]CTTT[CG][CG]CC[TG][CG]AGT[CG]TGG[CA]C
Central No

Motif logo

Genes containing this motif

37 unique genes found. Note that a gene can occur multiple times in the table below since a motif can be assigned to more than one position in its promoter.

Table filtering
ORF Direction Start Stop Score q-value
sll1664 Reverse -324 -343 -2.36049 0.197
sll1663 Forward -330 -311 -3.83545 0.282
sll0939 Forward -148 -129 -2.65548 0.197
ssl1784 Forward -202 -183 7.47261 0.0867
slr0679 Reverse -286 -305 5.30933 0.16
sll1509 Forward -326 -307 -1.27885 0.197
slr1599 Reverse -40 -59 -1.27885 0.197
sll1640 Forward -120 -101 6.88262 0.0949
sll1635 Forward -239 -220 5.211 0.16
ssr3451 Reverse -230 -249 -3.63879 0.273
slr1022 Reverse -335 -354 -2.55715 0.197
slr1896 Forward -36 -17 -2.55715 0.197
sll1787 Forward -204 -185 4.52268 0.16
slr1224 Reverse -247 -266 -3.44213 0.249
sll1138 Forward -290 -271 14.5524 0.0407
ssl3383 Reverse -323 -342 -2.55715 0.197
ssl3382 Reverse -101 -120 -2.55715 0.197
sll1708 Reverse -226 -245 4.916 0.16
sll1155 Forward -161 -142 4.71934 0.16
sll1151 Reverse -198 -217 -2.45882 0.197
slr1724 Reverse -258 -277 -3.73712 0.28
sll0245 Reverse -374 -393 -2.16383 0.197
sll1894 Reverse -314 -333 -3.93378 0.289
slr1969 Reverse -309 -328 -3.44213 0.249
sll1178 Reverse -251 -270 -0.4922 0.197
slr0960 Forward -321 -302 -2.16383 0.197
slr0776 Forward -127 -108 -3.44213 0.249
sll0756 Forward -239 -220 29.7937 0.000161
sll0021 Forward -253 -234 -2.26216 0.197
slr0216 Reverse -146 -165 5.01433 0.16
sll0209 Forward -236 -217 4.32602 0.16
slr0498 Forward -307 -288 -3.83545 0.282
slr0517 Forward -322 -303 -3.44213 0.249
sll1338 Reverse -38 -57 -3.44213 0.249
ssr7072 Forward -332 -313 -2.65548 0.197
sll7090 Reverse -224 -243 -3.04881 0.23
slr7092 Forward -265 -246 -3.04881 0.23
ORF Direction Start Stop Score q-value

TOMTOM

TOMTOM is an application for comparing motifs to known motifs in existing databases. Here's the possibility of running TOMTOM on this motif against the Prodoric or RegTransBase database. It can take up to 1 minute before the results show up, depending on server load. If you want to run TOMTOM against other databases, or with more custom settings, please visit the TOMTOM website.

Options

PSPM

0.000  0.333  0.667  0.000  
0.000 1.000 0.000 0.000
0.000 0.000 0.000 1.000
0.000 0.000 0.000 1.000
0.000 0.000 0.000 1.000
0.000 0.667 0.333 0.000
0.000 0.667 0.333 0.000
0.000 1.000 0.000 0.000
0.000 1.000 0.000 0.000
0.000 0.000 0.333 0.667
0.000 0.667 0.333 0.000
1.000 0.000 0.000 0.000
0.000 0.000 1.000 0.000
0.000 0.000 0.000 1.000
0.000 0.667 0.333 0.000
0.000 0.000 0.000 1.000
0.000 0.000 1.000 0.000
0.000 0.000 1.000 0.000
0.333 0.667 0.000 0.000
0.000 1.000 0.000 0.000