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Details for NP_442032.1_5

Name NP_442032.1_5
Length 11
Regular expression [TA][TC]TT[TGA][AC]TCCCT
Central No

Motif logo

Genes containing this motif

35 unique genes found. Note that a gene can occur multiple times in the table below since a motif can be assigned to more than one position in its promoter.

Table filtering
ORF Direction Start Stop Score q-value
sll1029 Forward -108 -98 16.9908 0.172
slr1800 Forward -394 -384 16.4008 0.246
sll1636 Forward -19 -9 17.4824 0.172
slr1770 Reverse -274 -284 17.4824 0.172
slr1199 Reverse -19 -29 17.4824 0.172
slr1545 Reverse -126 -136 17.4824 0.172
sll1464 Forward -200 -190 16.9908 0.172
slr1222 Forward -247 -237 16.6958 0.192
sll1138 Reverse -13 -23 16.6958 0.192
slr1226 Forward -99 -89 16.6958 0.192
ssr2062 Forward -299 -289 16.2041 0.279
sll1362 Reverse -74 -84 16.2041 0.279
ssr2406 Forward -120 -110 16.2041 0.279
sll1349 Forward -186 -176 16.9908 0.172
sll1766 Forward -370 -360 16.2041 0.279
slr0262 Forward -17 -7 17.4824 0.172
sll1981 Forward -393 -383 16.9908 0.172
slr1516 Reverse -187 -197 16.2041 0.279
slr1280 Forward -201 -191 16.6958 0.192
sll1540 Forward -249 -239 16.9908 0.172
slr0293 Reverse -202 -212 17.4824 0.172
sll1860 Forward -199 -189 16.9908 0.172
slr1933 Reverse -226 -236 16.9908 0.172
sll0329 Reverse -66 -76 17.4824 0.172
sll0016 Reverse -277 -287 16.2041 0.279
slr0006 Forward -122 -112 16.2041 0.279
ssl0769 Forward -172 -162 16.2041 0.279
slr0646 Reverse -154 -164 17.4824 0.172
sll0374 Reverse -102 -112 16.9908 0.172
slr0192 Forward -30 -20 17.4824 0.172
slr0079 Forward -83 -73 16.9908 0.172
slr0794 Forward -311 -301 16.6958 0.192
sll0782 Reverse -181 -191 16.4008 0.246
slr1586 Reverse -64 -74 16.6958 0.192
slr1653 Forward -366 -356 17.4824 0.172
ORF Direction Start Stop Score q-value

TOMTOM

TOMTOM is an application for comparing motifs to known motifs in existing databases. Here's the possibility of running TOMTOM on this motif against the Prodoric or RegTransBase database. It can take up to 1 minute before the results show up, depending on server load. If you want to run TOMTOM against other databases, or with more custom settings, please visit the TOMTOM website.

Options

PSPM

0.300  0.000  0.100  0.600  
0.100 0.300 0.000 0.600
0.000 0.100 0.000 0.900
0.100 0.000 0.000 0.900
0.200 0.000 0.300 0.500
0.500 0.400 0.000 0.100
0.000 0.000 0.100 0.900
0.000 1.000 0.000 0.000
0.000 1.000 0.000 0.000
0.000 1.000 0.000 0.000
0.000 0.000 0.100 0.900