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Details for NP_442023.1_2

Name NP_442023.1_2
Length 20
Regular expression GC[AC]CCGAGGG[CA]AAAG[AG][TC]CAG
Central No

Motif logo

Genes containing this motif

109 unique genes found. Note that a gene can occur multiple times in the table below since a motif can be assigned to more than one position in its promoter.

Table filtering
ORF Direction Start Stop Score q-value
sll1392 Forward -206 -187 4.81767 0.286
slr1113 Forward -332 -313 3.93269 0.286
sll0696 Reverse -324 -343 4.916 0.286
slr0743a Forward -112 -93 11.8975 0.199
sll1035 Forward -58 -39 4.32602 0.286
slr1106 Reverse -177 -196 4.32602 0.286
sll1031 Forward -297 -278 3.6377 0.296
sll1672 Reverse -342 -361 8.35759 0.255
sll1200 Forward -224 -205 15.8307 0.106
slr1299 Reverse -280 -299 4.52268 0.286
slr0977 Reverse -23 -42 7.66927 0.255
sll1020 Reverse -328 -347 9.53756 0.255
ssr1789 Forward -113 -94 3.44104 0.296
slr1756 Forward -240 -221 14.4541 0.143
slr1039 Reverse -45 -64 6.39097 0.275
slr2025 Reverse -366 -385 3.6377 0.296
sll1910 Reverse -305 -324 6.4893 0.275
slr2030 Forward -377 -358 6.4893 0.275
sll1072 Reverse -144 -163 14.1591 0.143
sll1072 Reverse -234 -253 3.93269 0.286
sll1807 Forward -71 -52 4.22769 0.286
sll1118 Reverse -215 -234 4.42435 0.286
slr1198 Forward -303 -284 4.42435 0.286
ssr2016 Forward -367 -348 6.88262 0.275
slr2073 Forward -214 -195 4.22769 0.286
slr1224 Forward -262 -243 5.60432 0.285
slr1363 Reverse -251 -270 3.93269 0.286
sll0865 Forward -72 -53 9.24257 0.255
slr0891 Reverse -48 -67 9.24257 0.255
sll0860 Reverse -323 -342 5.89931 0.283
sll1771 Reverse -95 -114 5.60432 0.285
slr1887 Forward -384 -365 4.32602 0.286
sll1708 Reverse -173 -192 4.52268 0.286
sll1703 Forward -181 -162 10.8159 0.234
sll1703 Forward -76 -57 9.24257 0.255
sll1702 Reverse -239 -258 8.35759 0.255
slr1807 Reverse -367 -386 10.8159 0.234
sll1626 Reverse -333 -352 4.71934 0.286
slr1991 Reverse -365 -384 6.29264 0.275
slr1719 Forward -284 -265 7.96426 0.255
ssr2551 Reverse -23 -42 3.53937 0.296
slr2107 Reverse -258 -277 7.66927 0.255
slr0807 Forward -362 -343 4.03102 0.286
slr0816 Reverse -335 -354 6.29264 0.275
slr1964 Reverse -357 -376 3.44104 0.296
sll1892 Forward -192 -173 3.53937 0.296
slr1970 Reverse -110 -129 5.11266 0.286
sll1867 Forward -341 -322 8.65258 0.255
slr1468 Forward -363 -344 7.66927 0.255
slr1267 Reverse -63 -82 4.03102 0.286
slr1278 Forward -374 -355 6.39097 0.275
sll1434 Forward -259 -240 4.62101 0.286
sll1101 Reverse -72 -91 4.62101 0.286
sll1095 Reverse -289 -308 7.7676 0.255
slr1159 Forward -194 -175 9.24257 0.255
sll1562 Forward -28 -9 5.60432 0.285
slr0958 Reverse -63 -82 3.6377 0.296
sll1528 Forward -239 -220 3.93269 0.286
sll0362 Forward -311 -292 7.47261 0.264
slr0165 Forward -335 -316 8.16093 0.255
sll0300 Forward -163 -144 7.27595 0.272
sll0335 Forward -118 -99 22.0256 0.0239
sll0335 Forward -40 -21 4.916 0.286
slr0373 Reverse -162 -181 22.0256 0.0239
slr0373 Reverse -240 -259 4.916 0.286
sll0757 Forward -317 -298 5.99764 0.279
slr0780 Reverse -203 -222 5.99764 0.279
slr0348 Forward -326 -307 15.6341 0.106
slr0016 Forward -69 -50 4.03102 0.286
ssr0349 Forward -291 -272 6.88262 0.275
sll0412 Forward -349 -330 12.7825 0.199
slr0435 Forward -173 -154 10.7175 0.234
sll0403 Forward -289 -270 4.03102 0.286
slr0439 Reverse -22 -41 4.03102 0.286
slr0055 Forward -23 -4 3.83436 0.289
sll0689 Reverse -114 -133 11.9958 0.199
sll0688 Reverse -72 -91 4.03102 0.286
sll0603 Forward -361 -342 4.71934 0.286
sll0398 Forward -307 -288 5.30933 0.286
sll0188 Forward -104 -85 6.68596 0.275
slr0191 Reverse -93 -112 6.68596 0.275
slr0191 Reverse -364 -383 3.6377 0.296
ssl0353 Forward -298 -279 6.09597 0.279
sll0549 Forward -40 -21 4.52268 0.286
slr0569 Reverse -256 -275 4.52268 0.286
sll0544 Reverse -200 -219 8.35759 0.255
slr0572 Forward -214 -195 8.35759 0.255
slr0842 Forward -75 -56 6.4893 0.275
sll0485 Forward -365 -346 16.5191 0.106
sll0593 Forward -310 -291 5.80098 0.285
sll0289 Forward -267 -248 7.86593 0.255
sll0785 Forward -305 -286 6.19431 0.278
ssl1255 Reverse -377 -396 5.01433 0.286
sll0738 Forward -226 -207 12.4875 0.199
sll0030 Forward -123 -104 4.03102 0.286
slr0040 Reverse -130 -149 4.03102 0.286
slr0536 Forward -66 -47 11.8975 0.199
sll1329 Forward -350 -331 5.211 0.286
sll1365 Forward -266 -247 6.78429 0.275
sll1476 Forward -260 -241 5.211 0.286
sll0735 Forward -338 -319 7.96426 0.255
sll0451 Reverse -252 -271 16.4207 0.106
sll0445 Reverse -219 -238 6.39097 0.275
sll0443 Reverse -320 -339 3.93269 0.286
slr0451 Forward -83 -64 3.93269 0.286
slr0596 Reverse -290 -309 5.60432 0.285
sll5107 Reverse -340 -359 3.44104 0.296
slr7083 Forward -339 -320 4.03102 0.286
sll7090 Forward -263 -244 8.94757 0.255
slr7092 Reverse -226 -245 8.94757 0.255
slr6034 Reverse -286 -305 3.44104 0.296
sll6055 Reverse -231 -250 8.84924 0.255
slr6057 Forward -237 -218 8.84924 0.255
6803t36 Forward -344 -325 5.01433 0.286
ORF Direction Start Stop Score q-value

TOMTOM

TOMTOM is an application for comparing motifs to known motifs in existing databases. Here's the possibility of running TOMTOM on this motif against the Prodoric or RegTransBase database. It can take up to 1 minute before the results show up, depending on server load. If you want to run TOMTOM against other databases, or with more custom settings, please visit the TOMTOM website.

Options

PSPM

0.167  0.000  0.833  0.000  
0.000 0.833 0.167 0.000
0.667 0.333 0.000 0.000
0.000 1.000 0.000 0.000
0.167 0.833 0.000 0.000
0.167 0.000 0.833 0.000
0.833 0.000 0.000 0.167
0.167 0.167 0.667 0.000
0.167 0.000 0.833 0.000
0.000 0.167 0.833 0.000
0.333 0.667 0.000 0.000
1.000 0.000 0.000 0.000
0.833 0.000 0.167 0.000
0.667 0.000 0.167 0.167
0.000 0.000 1.000 0.000
0.667 0.000 0.333 0.000
0.000 0.333 0.000 0.667
0.000 0.833 0.000 0.167
0.833 0.000 0.000 0.167
0.167 0.000 0.833 0.000