Your browser is old and dusty. Try Google Chrome!

Details for NP_442012.1_2

Name NP_442012.1_2
Length 20
Regular expression CTGGC[CG]ATCG[TC][GA]C[AG]GCAG[AG]T
Central No

Motif logo

Genes containing this motif

86 unique genes found. Note that a gene can occur multiple times in the table below since a motif can be assigned to more than one position in its promoter.

Table filtering
ORF Direction Start Stop Score q-value
sll1406 Reverse -250 -269 5.80098 0.211
sll1401 Reverse -55 -74 1.96607 0.294
sll1053 Forward -370 -351 5.30933 0.211
slr0723 Reverse -118 -137 3.93269 0.218
slr0741 Reverse -113 -132 2.85105 0.239
sll1201 Forward -49 -30 4.32602 0.216
slr1291 Reverse -177 -196 4.32602 0.216
ssl1792 Forward -135 -116 8.55425 0.179
sll0934 Forward -209 -190 3.53937 0.238
slr1611 Forward -394 -375 2.85105 0.239
slr1613 Forward -400 -381 4.03102 0.218
slr0670 Forward -26 -7 5.50599 0.211
slr1609 Reverse -324 -343 5.11266 0.211
sll1004 Reverse -170 -189 6.29264 0.211
slr1849 Forward -390 -371 5.11266 0.211
slr1385 Forward -191 -172 1.76941 0.295
ssr2333 Forward -393 -374 6.09597 0.211
ssl2542 Reverse -98 -117 2.94938 0.239
slr1704 Forward -347 -328 6.4893 0.211
sll1573 Reverse -380 -399 5.50599 0.211
slr1149 Reverse -142 -161 4.62101 0.216
slr1896 Reverse -364 -383 5.60432 0.211
sll1789 Reverse -180 -199 5.211 0.211
sll1123 Forward -352 -333 1.76941 0.295
ssl3712 Reverse -253 -272 19.6656 0.0689
sll1733 Reverse -41 -60 2.94938 0.239
slr1544 Reverse -6 -25 10.8159 0.134
ssl1633 Forward -391 -372 4.52268 0.216
slr0890 Reverse -323 -342 2.85105 0.239
slr0891 Forward -230 -211 3.93269 0.218
sll1761 Forward -279 -260 11.0125 0.134
sll2013 Forward -246 -227 4.81767 0.216
sll2003 Forward -366 -347 12.3892 0.134
sll0858 Forward -251 -232 5.89931 0.211
slr1243 Forward -328 -309 6.09597 0.211
sll1958 Reverse -256 -275 7.07928 0.211
sll1906 Forward -288 -269 4.42435 0.216
slr1717 Reverse -23 -42 6.39097 0.211
sll1988 Forward -242 -223 4.42435 0.216
slr2103 Forward -124 -105 2.94938 0.239
slr1511 Forward -187 -168 9.73422 0.156
slr1511 Forward -368 -349 8.35759 0.18
slr1518 Reverse -90 -109 5.211 0.211
sll2001 Reverse -14 -33 2.94938 0.239
ssr3570 Forward -370 -351 2.94938 0.239
sll1231 Forward -243 -224 5.40766 0.211
slr0804 Forward -278 -259 8.75091 0.178
slr0818 Forward -365 -346 14.4541 0.134
slr1339 Forward -106 -87 3.04771 0.239
sll1435 Forward -327 -308 6.88262 0.211
slr0938 Forward -293 -274 12.5858 0.134
slr1622 Forward -66 -47 2.65439 0.249
sll1537 Reverse -279 -298 3.14605 0.239
sll1537 Reverse -222 -241 2.85105 0.239
slr1627 Forward -199 -180 3.14605 0.239
slr1627 Forward -256 -237 2.85105 0.239
sll1530 Reverse -357 -376 9.14423 0.167
sll0141 Reverse -293 -312 4.62101 0.216
slr0161 Forward -101 -82 4.62101 0.216
sll0337 Forward -180 -161 7.66927 0.203
slr0008 Reverse -273 -292 8.16093 0.182
ssr0349 Reverse -197 -216 4.71934 0.216
slr0222 Reverse -321 -340 5.99764 0.211
sll0200 Forward -334 -315 9.83255 0.156
sll0406 Forward -246 -227 1.86774 0.294
sll0396 Reverse -8 -27 12.3892 0.134
sll0374 Forward -118 -99 5.40766 0.211
sll0887 Forward -162 -143 4.52268 0.216
sll0083 Forward -342 -323 4.12936 0.218
sll0584 Reverse -302 -321 7.07928 0.211
sll0098 Reverse -25 -44 11.2092 0.134
slr0108 Forward -213 -194 11.2092 0.134
sll0778 Reverse -197 -216 4.12936 0.218
ssl1255 Reverse -368 -387 10.4225 0.142
ssr1562 Reverse -366 -385 9.14423 0.167
slr1431 Forward -264 -245 5.11266 0.211
slr1461 Forward -338 -319 11.0125 0.134
sll1499 Forward -225 -206 6.68596 0.211
ssr2781 Reverse -123 -142 1.67108 0.3
sll1544 Reverse -314 -333 3.6377 0.234
slr1189 Forward -260 -241 13.9625 0.134
slr5078 Forward -78 -59 5.99764 0.211
sll8006 Forward -121 -102 7.27595 0.211
sll6017 Forward -26 -7 3.93269 0.218
sll6076 Forward -26 -7 3.93269 0.218
6803t11 Forward -263 -244 1.86774 0.294
6803t16 Forward -95 -76 2.94938 0.239
6803t20 Forward -110 -91 15.9291 0.134
6803t36 Forward -102 -83 11.2092 0.134
ORF Direction Start Stop Score q-value

TOMTOM

TOMTOM is an application for comparing motifs to known motifs in existing databases. Here's the possibility of running TOMTOM on this motif against the Prodoric or RegTransBase database. It can take up to 1 minute before the results show up, depending on server load. If you want to run TOMTOM against other databases, or with more custom settings, please visit the TOMTOM website.

Options

PSPM

0.000  0.889  0.000  0.111  
0.111 0.000 0.000 0.889
0.000 0.000 1.000 0.000
0.000 0.000 1.000 0.000
0.000 1.000 0.000 0.000
0.111 0.556 0.333 0.000
0.889 0.111 0.000 0.000
0.000 0.000 0.111 0.889
0.000 0.778 0.111 0.111
0.000 0.000 1.000 0.000
0.111 0.222 0.000 0.667
0.222 0.000 0.667 0.111
0.111 0.778 0.111 0.000
0.667 0.000 0.333 0.000
0.111 0.000 0.778 0.111
0.000 1.000 0.000 0.000
1.000 0.000 0.000 0.000
0.111 0.000 0.889 0.000
0.667 0.000 0.333 0.000
0.000 0.000 0.000 1.000