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Details for NP_441995.1_6

Name NP_441995.1_6
Length 20
Regular expression [GC]T[GC]GG[CGA]GA[AGT]G[GT][AG][TA][CA][AG]G[TC][GC]GC
Central No

Motif logo

Genes containing this motif

23 unique genes found. Note that a gene can occur multiple times in the table below since a motif can be assigned to more than one position in its promoter.

Table filtering
ORF Direction Start Stop Score q-value
slr1307 Forward -353 -334 13.7658 0.286
slr1087 Forward -232 -213 13.7658 0.286
slr2033 Reverse -377 -396 15.3391 0.286
slr0877 Forward -29 -10 19.764 0.163
sll1764 Forward -185 -166 20.1573 0.163
sll1147 Reverse -263 -282 14.2574 0.286
slr0820 Reverse -128 -147 16.8141 0.259
ssl3580 Forward -218 -199 14.9458 0.286
slr0362 Reverse -380 -399 13.2741 0.286
sll0070 Reverse -221 -240 13.7658 0.286
sll0102 Reverse -230 -249 13.4708 0.286
slr0105 Forward -116 -97 13.4708 0.286
slr0108 Forward -254 -235 13.9625 0.286
sll0898 Reverse -14 -33 14.8474 0.286
slr0601 Forward -224 -205 17.699 0.23
sll5122 Reverse -328 -347 18.879 0.163
slr5124 Forward -238 -219 18.879 0.163
sll7028 Forward -353 -334 15.4374 0.286
ssl7039 Forward -317 -298 16.3224 0.259
slr7041 Reverse -43 -62 16.3224 0.259
6803t13 Forward -367 -348 13.3725 0.286
6803t14 Forward -353 -334 14.2574 0.286
6803t36 Forward -143 -124 13.9625 0.286
ORF Direction Start Stop Score q-value

TOMTOM

TOMTOM is an application for comparing motifs to known motifs in existing databases. Here's the possibility of running TOMTOM on this motif against the Prodoric or RegTransBase database. It can take up to 1 minute before the results show up, depending on server load. If you want to run TOMTOM against other databases, or with more custom settings, please visit the TOMTOM website.

Options

PSPM

0.091  0.364  0.545  0.000  
0.000 0.182 0.000 0.818
0.000 0.455 0.545 0.000
0.000 0.091 0.909 0.000
0.000 0.091 0.909 0.000
0.273 0.364 0.364 0.000
0.000 0.000 0.818 0.182
1.000 0.000 0.000 0.000
0.364 0.000 0.364 0.273
0.182 0.182 0.636 0.000
0.000 0.000 0.545 0.455
0.455 0.091 0.364 0.091
0.273 0.000 0.091 0.636
0.273 0.727 0.000 0.000
0.364 0.182 0.364 0.091
0.000 0.091 0.727 0.182
0.000 0.273 0.000 0.727
0.000 0.273 0.636 0.091
0.000 0.000 1.000 0.000
0.000 1.000 0.000 0.000