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Details for NP_441980.1_9

Name NP_441980.1_9
Length 20
Regular expression [AC][TCG][GAC]G[TC]G[AC]G[TG]C[CG]AT[CT][GAT]G[CG][CA][CA]A
Central No

Motif logo

Genes containing this motif

6 unique genes found. Note that a gene can occur multiple times in the table below since a motif can be assigned to more than one position in its promoter.

Table filtering
ORF Direction Start Stop Score q-value
slr0769 Reverse -125 -144 13.9625 0.298
sll0622 Reverse -356 -375 18.0924 0.263
slr5073 Forward -254 -235 13.9625 0.298
slr5111 Forward -308 -289 13.9625 0.298
ssl7039 Reverse -338 -357 14.2574 0.298
slr7041 Forward -22 -3 14.2574 0.298
ORF Direction Start Stop Score q-value

TOMTOM

TOMTOM is an application for comparing motifs to known motifs in existing databases. Here's the possibility of running TOMTOM on this motif against the Prodoric or RegTransBase database. It can take up to 1 minute before the results show up, depending on server load. If you want to run TOMTOM against other databases, or with more custom settings, please visit the TOMTOM website.

Options

PSPM

0.750  0.250  0.000  0.000  
0.000 0.250 0.250 0.500
0.250 0.250 0.500 0.000
0.000 0.000 1.000 0.000
0.000 0.250 0.000 0.750
0.000 0.000 1.000 0.000
0.750 0.250 0.000 0.000
0.000 0.000 1.000 0.000
0.000 0.125 0.250 0.625
0.000 1.000 0.000 0.000
0.000 0.750 0.250 0.000
0.875 0.000 0.125 0.000
0.000 0.000 0.000 1.000
0.000 0.500 0.000 0.500
0.250 0.125 0.375 0.250
0.000 0.000 1.000 0.000
0.000 0.750 0.250 0.000
0.375 0.625 0.000 0.000
0.375 0.625 0.000 0.000
0.750 0.000 0.125 0.125