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Details for NP_441972.1_3

Name NP_441972.1_3
Length 20
Regular expression A[TG][GC]GG[AT]TC[ACT][GC][CG][GT]GG[GA][AT]A[GA]GG
Central Yes

Motif logo

Genes containing this motif

79 unique genes found. Note that a gene can occur multiple times in the table below since a motif can be assigned to more than one position in its promoter.

Table filtering
ORF Direction Start Stop Score q-value
sll1395 Reverse -320 -339 16.3224 0.146
sll1058 Forward -159 -140 11.3075 0.284
slr1130 Forward -219 -200 11.3075 0.284
sll0227 Reverse -219 -238 11.0125 0.286
sll0225 Reverse -83 -102 16.1257 0.146
ssl2615 Reverse -377 -396 14.2574 0.198
slr1095 Forward -359 -340 11.7992 0.284
sll1037 Reverse -101 -120 11.5042 0.284
sll1655 Forward -120 -101 17.699 0.146
ssr1604 Forward -255 -236 17.3057 0.146
smr0005 Forward -212 -193 12.7825 0.257
sll1505 Reverse -347 -366 10.7175 0.298
sll1504 Reverse -49 -68 10.7175 0.298
ssr1736 Reverse -273 -292 15.9291 0.146
sml0005 Forward -84 -65 11.6025 0.284
slr2048 Forward -196 -177 12.0942 0.28
slr2053 Forward -373 -354 11.5042 0.284
sll1570 Forward -68 -49 12.3892 0.278
sll1121 Reverse -126 -145 12.7825 0.257
slr2073 Reverse -142 -161 16.4207 0.146
slr1226 Reverse -290 -309 19.174 0.104
sll1768 Reverse -328 -347 10.9142 0.293
slr1742 Forward -170 -151 13.0775 0.257
slr1744 Forward -239 -220 14.2574 0.198
sll0853 Reverse -29 -48 11.1109 0.284
slr0862 Forward -191 -172 14.9458 0.185
slr1991 Forward -142 -123 15.8307 0.146
slr1267 Reverse -197 -216 14.1591 0.198
slr1272 Reverse -254 -273 14.7491 0.192
sll1444 Reverse -87 -106 12.0942 0.28
slr1160 Forward -342 -323 12.0942 0.28
sll0910 Forward -383 -364 22.6156 0.0804
slr1626 Reverse -113 -132 18.879 0.104
slr1628 Reverse -265 -284 11.4058 0.284
slr1647 Forward -376 -357 19.0757 0.104
slr0287 Reverse -89 -108 11.1109 0.284
slr0147 Forward -217 -198 12.2908 0.28
slr1924 Forward -269 -250 11.9958 0.284
sll0301 Forward -399 -380 16.0274 0.146
slr0171 Forward -105 -86 16.3224 0.146
sll0192 Forward -187 -168 12.1925 0.28
sll0071 Forward -178 -159 12.5858 0.264
sll0068 Reverse -113 -132 14.5524 0.198
sll0461 Reverse -97 -116 11.4058 0.284
slr0473 Forward -358 -339 11.4058 0.284
slr0477 Reverse -353 -372 11.2092 0.284
slr0480 Reverse -64 -83 11.4058 0.284
slr0630 Reverse -34 -53 12.6841 0.26
slr0643 Reverse -350 -369 11.2092 0.284
slr0575 Reverse -311 -330 10.7175 0.298
sll0825 Reverse -261 -280 19.6656 0.104
slr0844 Forward -203 -184 19.6656 0.104
sll0080 Reverse -178 -197 12.7825 0.257
slr0084 Forward -68 -49 12.7825 0.257
sll0489 Forward -323 -304 17.404 0.146
sll0594 Forward -144 -125 11.6025 0.284
sll0107 Forward -144 -125 15.8307 0.146
slr0316 Forward -146 -127 15.7324 0.146
sll0794 Reverse -340 -359 11.1109 0.284
sll0496 Reverse -57 -76 11.7008 0.284
sll0533 Reverse -324 -343 13.7658 0.217
slr0549 Forward -170 -151 13.7658 0.217
sll0519 Forward -210 -191 15.9291 0.146
slr1418 Reverse -45 -64 15.9291 0.146
slr1451 Forward -168 -149 13.0775 0.257
sll1363 Reverse -183 -202 14.1591 0.198
slr0652 Forward -294 -275 14.1591 0.198
sll0430 Forward -308 -289 20.8456 0.0911
slr1176 Reverse -23 -42 20.8456 0.0911
slr1178 Reverse -209 -228 11.1109 0.284
slr0593 Reverse -268 -287 15.3391 0.164
sll5084 Forward -194 -175 10.8159 0.298
sll7002 Reverse -230 -249 11.7008 0.284
ssl7039 Reverse -210 -229 16.5191 0.146
slr7041 Forward -150 -131 16.5191 0.146
sll7064 Forward -337 -318 13.5691 0.228
ssl6035 Reverse -295 -314 11.1109 0.284
6803t11 Forward -322 -303 12.8808 0.257
6803t17 Reverse -372 -391 11.0125 0.286
ORF Direction Start Stop Score q-value

TOMTOM

TOMTOM is an application for comparing motifs to known motifs in existing databases. Here's the possibility of running TOMTOM on this motif against the Prodoric or RegTransBase database. It can take up to 1 minute before the results show up, depending on server load. If you want to run TOMTOM against other databases, or with more custom settings, please visit the TOMTOM website.

Options

PSPM

0.938  0.000  0.062  0.000  
0.125 0.000 0.375 0.500
0.000 0.250 0.562 0.188
0.000 0.000 1.000 0.000
0.000 0.062 0.938 0.000
0.375 0.062 0.188 0.375
0.062 0.000 0.125 0.812
0.000 0.750 0.188 0.062
0.375 0.312 0.000 0.312
0.000 0.312 0.562 0.125
0.000 0.500 0.500 0.000
0.125 0.188 0.375 0.312
0.000 0.000 1.000 0.000
0.062 0.000 0.812 0.125
0.375 0.000 0.438 0.188
0.562 0.000 0.000 0.438
0.938 0.000 0.000 0.062
0.250 0.188 0.562 0.000
0.000 0.188 0.812 0.000
0.000 0.000 1.000 0.000