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Details for NP_441962.1_9

Name NP_441962.1_9
Length 20
Regular expression C[CA]CA[CGA][GTA][CG][CT]TG[TCA][TC]G[GAC]CC[AGC]G[GC][AG]
Central Yes

Motif logo

Genes containing this motif

137 unique genes found. Note that a gene can occur multiple times in the table below since a motif can be assigned to more than one position in its promoter.

Table filtering
ORF Direction Start Stop Score q-value
sll1213 Forward -208 -189 5.60432 0.264
sll1209 Forward -223 -204 5.89931 0.258
sll1064 Reverse -319 -338 5.70265 0.261
ssl2069 Reverse -344 -363 8.84924 0.258
slr1125 Reverse -303 -322 9.83255 0.258
sll1043 Reverse -78 -97 11.6025 0.228
sll0698 Forward -102 -83 6.09597 0.258
slr0737 Reverse -94 -113 6.09597 0.258
slr0740 Forward -167 -148 5.70265 0.261
slr0250 Forward -223 -204 5.89931 0.258
sll0222 Reverse -95 -114 5.01433 0.286
sll1041 Reverse -75 -94 5.99764 0.258
slr1105 Forward -139 -120 5.80098 0.258
sll1683 Reverse -89 -108 15.1424 0.159
slr1779 Forward -264 -245 8.45592 0.258
slr1780 Forward -264 -245 12.5858 0.191
slr1799 Reverse -342 -361 7.86593 0.258
slr1298 Forward -388 -369 5.80098 0.258
sll0934 Forward -135 -116 7.47261 0.258
slr1087 Reverse -312 -331 4.81767 0.29
sll0649 Reverse -13 -32 9.73422 0.258
ssl1918 Reverse -379 -398 5.211 0.28
slr2049 Forward -67 -48 8.25926 0.258
slr2049 Reverse -119 -138 5.60432 0.264
sll0985 Reverse -231 -250 12.6841 0.191
slr1037 Forward -199 -180 12.6841 0.191
slr1380 Reverse -261 -280 9.83255 0.258
sll1300 Forward -111 -92 5.211 0.28
sll1296 Reverse -96 -115 5.99764 0.258
sll1290 Reverse -157 -176 22.2223 0.0702
sll1927 Reverse -198 -217 4.62101 0.297
slr2012 Reverse -150 -169 6.78429 0.258
sll1911 Forward -115 -96 6.39097 0.258
ssl3441 Forward -309 -290 6.88262 0.258
sll1812 Reverse -265 -284 6.58763 0.258
sll1812 Forward -129 -110 5.80098 0.258
ssl3335 Forward -151 -132 5.40766 0.271
sll1732 Forward -287 -268 8.16093 0.258
sll1724 Forward -314 -295 14.0608 0.164
sll1721 Forward -257 -238 8.55425 0.258
slr1838 Reverse -121 -140 8.55425 0.258
sll1358 Reverse -225 -244 6.68596 0.258
sll1280 Forward -81 -62 7.27595 0.258
slr1356 Reverse -313 -332 7.27595 0.258
slr1357 Reverse -269 -288 19.469 0.122
ssr3184 Forward -226 -207 7.86593 0.258
ssr3184 Reverse -375 -394 6.58763 0.258
slr0853 Forward -269 -250 9.24257 0.258
sll0839 Reverse -101 -120 9.73422 0.258
sll0838 Reverse -143 -162 10.9142 0.258
slr1991 Reverse -87 -106 16.9124 0.138
slr2001 Forward -302 -283 6.4893 0.258
sll1586 Reverse -360 -379 17.2074 0.138
slr2081 Reverse -268 -287 9.93088 0.258
slr1518 Forward -90 -71 8.35759 0.258
sll1411 Forward -382 -363 6.29264 0.258
ssl2749 Forward -99 -80 6.29264 0.258
sll1228 Forward -292 -273 4.81767 0.29
slr0812 Reverse -173 -192 7.7676 0.258
ssr1391 Reverse -198 -217 8.06259 0.258
ssl3580 Reverse -200 -219 5.89931 0.258
slr1975 Reverse -240 -259 6.29264 0.258
sll1182 Forward -145 -126 12.9791 0.191
slr1267 Reverse -51 -70 6.19431 0.258
sll1167 Reverse -49 -68 6.58763 0.258
ssr2130 Forward -117 -98 6.58763 0.258
slr1533 Reverse -261 -280 5.89931 0.258
ssr1951 Reverse -334 -353 14.8474 0.159
ssr1951 Forward -273 -254 6.29264 0.258
slr1174 Forward -199 -180 8.94757 0.258
sll0915 Forward -71 -52 8.55425 0.258
slr0940 Reverse -90 -109 8.55425 0.258
slr0943 Forward -268 -249 14.5524 0.161
slr1639 Forward -257 -238 8.65258 0.258
sll0420 Reverse -381 -400 5.99764 0.258
ssl0483 Reverse -71 -90 4.71934 0.29
slr0292 Forward -268 -249 4.71934 0.29
sll0145 Forward -292 -273 7.66927 0.258
sll1853 Forward -204 -185 5.80098 0.258
slr0327 Forward -52 -33 6.58763 0.258
sll0298 Forward -382 -363 16.7157 0.138
slr0370 Reverse -91 -110 13.3725 0.191
slr0383 Reverse -24 -43 7.86593 0.258
slr0387 Reverse -350 -369 6.68596 0.258
slr0774 Forward -377 -358 15.2408 0.159
slr0358 Forward -358 -339 5.11266 0.28
slr0008 Forward -222 -203 9.53756 0.258
slr0438 Reverse -205 -224 8.75091 0.258
sll0068 Reverse -23 -42 7.17762 0.258
sll0462 Forward -78 -59 5.89931 0.258
sll0461 Reverse -191 -210 4.81767 0.29
slr0473 Forward -264 -245 4.81767 0.29
slr0492 Forward -40 -21 6.68596 0.258
sll0394 Forward -293 -274 4.916 0.29
sll0380 Reverse -120 -139 6.98095 0.258
sll0374 Forward -213 -194 7.07928 0.258
slr0897 Forward -167 -148 9.3409 0.258
slr0899 Reverse -96 -115 7.07928 0.258
slr0922 Forward -362 -343 5.11266 0.28
slr0559 Reverse -315 -334 11.7992 0.222
ssr1398 Forward -105 -86 4.71934 0.29
ssr1399 Forward -399 -380 4.71934 0.29
sll0832 Reverse -277 -296 6.68596 0.258
ssr1407 Forward -33 -14 6.68596 0.258
slr0833 Forward -301 -282 6.68596 0.258
sll0827 Forward -87 -68 5.50599 0.268
slr0841 Reverse -180 -199 5.50599 0.268
slr0091 Reverse -124 -143 5.11266 0.28
slr0093 Reverse -20 -39 9.43923 0.258
slr0511 Reverse -74 -93 9.0459 0.258
sll0587 Forward -173 -154 7.96426 0.258
sll0096 Forward -30 -11 8.06259 0.258
slr0110 Forward -339 -320 11.0125 0.258
slr0314 Forward -339 -320 5.211 0.28
sll0745 Forward -376 -357 6.19431 0.258
slr0033 Reverse -180 -199 5.40766 0.271
sll0514 Forward -24 -5 6.68596 0.258
slr0536 Reverse -281 -300 9.43923 0.258
sll0508 Reverse -301 -320 8.45592 0.258
sll0493 Forward -319 -300 14.9458 0.159
slr0930 Forward -241 -222 4.81767 0.29
sll0629 Forward -224 -205 6.19431 0.258
slr0653 Reverse -288 -307 6.19431 0.258
sll1483 Reverse -152 -171 7.57094 0.258
sll1481 Reverse -121 -140 7.47261 0.258
sll0446 Reverse -355 -374 6.98095 0.258
sll0577 Forward -129 -110 10.4225 0.258
slr0588 Reverse -67 -86 10.4225 0.258
ssl5001 Reverse -367 -386 12.1925 0.202
sll5046 Forward -223 -204 7.27595 0.258
sll5094 Forward -266 -247 5.11266 0.28
ssl7039 Forward -192 -173 12.4875 0.191
slr7041 Reverse -168 -187 12.4875 0.191
sll7063 Forward -187 -168 6.39097 0.258
slr6006 Reverse -69 -88 8.65258 0.258
slr6065 Reverse -69 -88 8.65258 0.258
slr6103 Forward -131 -112 6.88262 0.258
6803t04 Forward -310 -291 8.35759 0.258
6803t07 Reverse -334 -353 14.1591 0.164
6803t14 Forward -111 -92 10.1275 0.258
6803t24 Reverse -276 -295 8.75091 0.258
ORF Direction Start Stop Score q-value

TOMTOM

TOMTOM is an application for comparing motifs to known motifs in existing databases. Here's the possibility of running TOMTOM on this motif against the Prodoric or RegTransBase database. It can take up to 1 minute before the results show up, depending on server load. If you want to run TOMTOM against other databases, or with more custom settings, please visit the TOMTOM website.

Options

PSPM

0.000  1.000  0.000  0.000  
0.222 0.778 0.000 0.000
0.111 0.889 0.000 0.000
0.889 0.000 0.111 0.000
0.222 0.333 0.333 0.111
0.222 0.111 0.333 0.333
0.111 0.556 0.333 0.000
0.000 0.778 0.000 0.222
0.000 0.000 0.000 1.000
0.000 0.000 1.000 0.000
0.222 0.333 0.000 0.444
0.000 0.222 0.000 0.778
0.111 0.000 0.889 0.000
0.333 0.222 0.444 0.000
0.000 1.000 0.000 0.000
0.000 1.000 0.000 0.000
0.333 0.222 0.333 0.111
0.111 0.000 0.889 0.000
0.000 0.222 0.778 0.000
0.667 0.000 0.333 0.000