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Details for NP_441938.1_1

Name NP_441938.1_1
Length 20
Regular expression T[CG][CG][GA]C[CG]AT[CG]AC[CA]G[TC]G[AG]AG[CG]T
Central No

Motif logo

Genes containing this motif

37 unique genes found. Note that a gene can occur multiple times in the table below since a motif can be assigned to more than one position in its promoter.

Table filtering
ORF Direction Start Stop Score q-value
slr1122 Reverse -247 -266 1.27776 0.272
slr0250 Reverse -343 -362 12.2908 0.167
sll1682 Forward -259 -240 1.27776 0.272
slr1306 Forward -146 -127 2.3594 0.272
slr0984 Reverse -223 -242 7.96426 0.229
sll1068 Forward -183 -164 1.57275 0.272
slr1890 Reverse -230 -249 1.57275 0.272
slr1201 Reverse -351 -370 3.14605 0.272
sll0875 Reverse -234 -253 1.57275 0.272
slr0878 Reverse -123 -142 2.16274 0.272
ssl3382 Reverse -323 -342 3.93269 0.272
slr2059 Forward -158 -139 7.47261 0.229
ssr2898 Forward -340 -321 11.6025 0.167
sll1982 Reverse -96 -115 3.93269 0.272
slr2092 Forward -167 -148 3.93269 0.272
sll1423 Forward -22 -3 2.3594 0.272
sll0802 Forward -164 -145 2.65439 0.272
sll1885 Reverse -365 -384 5.50599 0.272
slr1533 Reverse -229 -248 1.47442 0.272
slr0952 Forward -392 -373 8.45592 0.229
slr0954 Forward -317 -298 9.3409 0.229
sll0257 Forward -232 -213 1.37609 0.272
slr0399 Forward -390 -371 4.52268 0.272
slr0322 Forward -219 -200 1.76941 0.272
slr0381 Forward -215 -196 7.27595 0.229
slr0773 Forward -185 -166 3.44104 0.272
slr0342 Reverse -289 -308 8.94757 0.229
slr0343 Forward -202 -183 3.34271 0.272
slr0058 Reverse -93 -112 0.884433 0.298
ssl1300 Forward -375 -356 1.96607 0.272
sll0613 Reverse -250 -269 3.73603 0.272
sll0887 Forward -258 -239 2.75272 0.272
sll0892 Reverse -280 -299 1.57275 0.272
slr0080 Forward -233 -214 11.5042 0.167
slr0522 Forward -92 -73 2.45773 0.272
slr0313 Forward -280 -261 1.37609 0.272
sll0728 Reverse -118 -137 3.24438 0.272
ORF Direction Start Stop Score q-value

TOMTOM

TOMTOM is an application for comparing motifs to known motifs in existing databases. Here's the possibility of running TOMTOM on this motif against the Prodoric or RegTransBase database. It can take up to 1 minute before the results show up, depending on server load. If you want to run TOMTOM against other databases, or with more custom settings, please visit the TOMTOM website.

Options

PSPM

0.000  0.000  0.111  0.889  
0.000 0.778 0.222 0.000
0.111 0.556 0.333 0.000
0.222 0.000 0.778 0.000
0.000 1.000 0.000 0.000
0.000 0.778 0.222 0.000
0.889 0.000 0.000 0.111
0.000 0.000 0.000 1.000
0.000 0.778 0.222 0.000
1.000 0.000 0.000 0.000
0.000 1.000 0.000 0.000
0.222 0.667 0.111 0.000
0.000 0.000 1.000 0.000
0.000 0.333 0.000 0.667
0.000 0.000 1.000 0.000
0.667 0.000 0.333 0.000
1.000 0.000 0.000 0.000
0.000 0.000 1.000 0.000
0.000 0.778 0.222 0.000
0.000 0.000 0.000 1.000