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Details for NP_441917.1_4

Name NP_441917.1_4
Length 20
Regular expression [TA][CG][CTA]G[GTC]T[GC][GCT][CGT]TT[ATC][CAT]G[GC][CT][AT][TC][GA]G
Central Yes

Motif logo

Genes containing this motif

9 unique genes found. Note that a gene can occur multiple times in the table below since a motif can be assigned to more than one position in its promoter.

Table filtering
ORF Direction Start Stop Score q-value
slr1298 Reverse -355 -374 16.5191 0.116
slr1083 Reverse -264 -283 16.2241 0.116
slr1729 Reverse -183 -202 16.3224 0.116
slr1329 Reverse -229 -248 20.7473 0.055
sll1853 Forward -316 -297 20.944 0.055
sll0830 Reverse -289 -308 14.7491 0.195
sll0096 Forward -303 -284 24.5822 0.0271
slr0590 Forward -373 -354 19.469 0.0616
slr8016 Reverse -227 -246 13.5691 0.284
ORF Direction Start Stop Score q-value

TOMTOM

TOMTOM is an application for comparing motifs to known motifs in existing databases. Here's the possibility of running TOMTOM on this motif against the Prodoric or RegTransBase database. It can take up to 1 minute before the results show up, depending on server load. If you want to run TOMTOM against other databases, or with more custom settings, please visit the TOMTOM website.

Options

PSPM

0.200  0.000  0.000  0.800  
0.000 0.800 0.200 0.000
0.200 0.400 0.000 0.400
0.000 0.000 1.000 0.000
0.000 0.200 0.400 0.400
0.000 0.000 0.000 1.000
0.000 0.200 0.800 0.000
0.000 0.200 0.600 0.200
0.000 0.400 0.400 0.200
0.000 0.000 0.000 1.000
0.000 0.000 0.000 1.000
0.400 0.200 0.000 0.400
0.200 0.600 0.000 0.200
0.000 0.000 1.000 0.000
0.000 0.400 0.600 0.000
0.000 0.800 0.000 0.200
0.800 0.000 0.000 0.200
0.000 0.400 0.000 0.600
0.200 0.000 0.800 0.000
0.000 0.000 1.000 0.000