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Details for NP_441834.1_3

Name NP_441834.1_3
Length 20
Regular expression G[AT]T[TC]TGC[TC][GC]ATC[CT][AG][TC][CG][AGT]A[TG][CT]
Central Yes

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Genes containing this motif

6 unique genes found. Note that a gene can occur multiple times in the table below since a motif can be assigned to more than one position in its promoter.

Table filtering
ORF Direction Start Stop Score q-value
sll1946 Reverse -323 -342 22.1239 0.0358
sll0258 Forward -355 -336 22.1239 0.0358
slr0292 Reverse -343 -362 22.1239 0.0358
slr0093 Forward -383 -364 18.584 0.119
ssl5091 Reverse -88 -107 20.1573 0.0667
ssr5092 Forward -284 -265 20.1573 0.0667
ORF Direction Start Stop Score q-value

TOMTOM

TOMTOM is an application for comparing motifs to known motifs in existing databases. Here's the possibility of running TOMTOM on this motif against the Prodoric or RegTransBase database. It can take up to 1 minute before the results show up, depending on server load. If you want to run TOMTOM against other databases, or with more custom settings, please visit the TOMTOM website.

Options

PSPM

0.000  0.000  1.000  0.000  
0.571 0.071 0.143 0.214
0.000 0.143 0.000 0.857
0.000 0.357 0.143 0.500
0.000 0.000 0.000 1.000
0.071 0.071 0.786 0.071
0.000 1.000 0.000 0.000
0.143 0.286 0.071 0.500
0.000 0.286 0.714 0.000
0.857 0.143 0.000 0.000
0.000 0.071 0.143 0.786
0.000 0.857 0.000 0.143
0.000 0.571 0.000 0.429
0.714 0.000 0.286 0.000
0.000 0.214 0.000 0.786
0.000 0.571 0.429 0.000
0.500 0.071 0.214 0.214
0.929 0.000 0.071 0.000
0.000 0.000 0.214 0.786
0.000 0.714 0.000 0.286