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Details for NP_441817.1_5

Name NP_441817.1_5
Length 20
Regular expression [CA]T[GC][AC]AAAAATC[CTG][GC]C[CGT][GC]A[ATG]GC
Central No

Motif logo

Genes containing this motif

4 unique genes found. Note that a gene can occur multiple times in the table below since a motif can be assigned to more than one position in its promoter.

Table filtering
ORF Direction Start Stop Score q-value
slr0744 Forward -350 -331 17.699 0.211
slr2058 Reverse -357 -376 23.5006 0.022
slr1971 Reverse -303 -322 17.404 0.211
sll0269 Forward -348 -329 24.7789 0.0177
ORF Direction Start Stop Score q-value

TOMTOM

TOMTOM is an application for comparing motifs to known motifs in existing databases. Here's the possibility of running TOMTOM on this motif against the Prodoric or RegTransBase database. It can take up to 1 minute before the results show up, depending on server load. If you want to run TOMTOM against other databases, or with more custom settings, please visit the TOMTOM website.

Options

PSPM

0.231  0.615  0.000  0.154  
0.000 0.154 0.000 0.846
0.154 0.308 0.462 0.077
0.692 0.231 0.077 0.000
0.846 0.000 0.154 0.000
0.846 0.000 0.077 0.077
1.000 0.000 0.000 0.000
1.000 0.000 0.000 0.000
0.846 0.000 0.154 0.000
0.000 0.000 0.000 1.000
0.000 1.000 0.000 0.000
0.000 0.385 0.231 0.385
0.000 0.231 0.769 0.000
0.000 0.769 0.154 0.077
0.154 0.385 0.231 0.231
0.000 0.231 0.769 0.000
0.769 0.154 0.077 0.000
0.385 0.077 0.231 0.308
0.000 0.000 1.000 0.000
0.000 1.000 0.000 0.000