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Details for NP_441811.1_2

Name NP_441811.1_2
Length 20
Regular expression C[GT][CGA]G[TC][TC]TT[CGA]AC[CT]TC[CT]A[CT][CG]A[AC]
Central No

Motif logo

Genes containing this motif

19 unique genes found. Note that a gene can occur multiple times in the table below since a motif can be assigned to more than one position in its promoter.

Table filtering
ORF Direction Start Stop Score q-value
sll1394 Forward -300 -281 15.8299 0.284
slr1023 Reverse -362 -381 14.8466 0.284
slr1542 Reverse -338 -357 13.9616 0.284
ssl2245 Reverse -178 -197 14.8466 0.284
sll1349 Forward -190 -171 16.6165 0.284
slr2079 Reverse -45 -64 16.2232 0.284
slr1324 Reverse -113 -132 14.4533 0.284
ssr3307 Reverse -93 -112 18.0915 0.233
sll0327 Reverse -334 -353 14.6499 0.284
slr0230 Forward -234 -215 14.7483 0.284
slr0635 Reverse -325 -344 20.8447 0.222
slr0191 Reverse -290 -309 13.8633 0.284
sll0555 Reverse -30 -49 16.9115 0.284
sll5006 Forward -347 -328 13.5683 0.284
sll5090 Forward -347 -328 13.5683 0.284
ssr5092 Reverse -373 -392 13.5683 0.284
ssl5113 Reverse -264 -283 18.5831 0.233
slr5115 Forward -230 -211 18.5831 0.233
ssr6003 Forward -347 -328 13.5683 0.284
ORF Direction Start Stop Score q-value

TOMTOM

TOMTOM is an application for comparing motifs to known motifs in existing databases. Here's the possibility of running TOMTOM on this motif against the Prodoric or RegTransBase database. It can take up to 1 minute before the results show up, depending on server load. If you want to run TOMTOM against other databases, or with more custom settings, please visit the TOMTOM website.

Options

PSPM

0.091  0.818  0.000  0.091  
0.000 0.000 0.545 0.455
0.273 0.364 0.364 0.000
0.091 0.182 0.636 0.091
0.000 0.364 0.000 0.636
0.000 0.273 0.000 0.727
0.000 0.000 0.000 1.000
0.000 0.000 0.000 1.000
0.273 0.364 0.364 0.000
0.909 0.000 0.000 0.091
0.000 0.909 0.000 0.091
0.000 0.455 0.091 0.455
0.000 0.182 0.000 0.818
0.000 1.000 0.000 0.000
0.091 0.455 0.182 0.273
0.818 0.000 0.182 0.000
0.000 0.545 0.000 0.455
0.182 0.545 0.273 0.000
1.000 0.000 0.000 0.000
0.545 0.273 0.182 0.000